FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SULSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 78/258 (30.23%), Postives = 125/258 (48.45%), Query Frame = 2
Query:   53 DYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            + S    S ++ P  + E FI   R++   P K+  ++   ++  L++A +      K E I  L G+ IA+KD I      TT  +K L    P   DA  + RL+  G ++ GKTN+ E   G+S  N  +   RNP+D  ++               + P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G    TVED  ++   I+G  P    + S+P  ++ L      +  +K+G
Sbjct:   10 ELSDLVKSKEVKPSEIVEAFIE--RKNQVEP-KIKAYVTALDDLALEKAKKRDQELTKLENIPDLFGLPIAIKDNISTKDIKTTCSSKMLENFVPVY-DATVIERLKSQGYVITGKTNLDEFAMGSSTENSAFFPTRNPWDLERVPGGSSGGSAAVVASGMAPASLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPFGRTVEDVAMIMNVISGKDPKDSTSRSIPVPNY-LESLNKDVKGLKIG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOKA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 73/207 (35.27%), Postives = 102/207 (49.28%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  F+  NEE    +A E   +  KGE  + L G+ I +KD I      TT  +K L+   P   DA  + RL   G I +GK NM E   G+S  N  + + RNP+D  ++                 P ALG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   V  AI G  P    + ++P
Sbjct:   39 KVQAFLTLNEEQARAKAKELDNQLAKGEETNPLFGLPIGIKDNIVTKGLRTTCASKILYNFDPIY-DATVMERLNAAGTITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITRTVEDNAYVLQAIAGVDPMDSTSANIP 244          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NATTJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gatA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 71/233 (30.47%), Postives = 113/233 (48.50%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H  T+++  +    GD +   +       + E+ +    +  +I   +E  L Q+ E   +  KGE +  L G+ +A+KD I      T+  +K L    P   +A  + +L   GAI+VGKTNM E   G+S  N  + V  NP+D  ++                 P+ALG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G L+  VED  +    I+G
Sbjct:    4 HELTLMEVKRGLEQGDFSSEELVTSVYDRIEETED---HIKAYITLTKEQALAQSKEIDSQRAKGEELGPLAGIPVAIKDNICTKDVTTSCASKILEDFVP-PYNATVISKLAEAGAIIVGKTNMDEFAMGSSTENSAFFVTSNPWDTERVPGGSSGGSAASVASAQVPLALGSDTGGSIRQPASFCGVVGMKPTYGRVSRYGLVAFASSLDQIGPLSKNVEDTALALDIISG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus stearothermophilus GN=gatA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 73/207 (35.27%), Postives = 102/207 (49.28%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  F+  NEE    +A E   +  KGE  + L G+ I +KD I      TT   K L+   P   DA  + RL   GAI +GK NM E   G+S  N  + + RNP+D  ++                 P ALG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI G  P    + ++P
Sbjct:   39 KVQAFLTLNEEQARAKAKELDDQLAKGEETNPLFGLPIGIKDNIVTKGLRTTCAIKILYNFDPIY-DATVMERLNAAGAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLKRVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITRTVEDNAYLLQAIAGVDPMDSTSANVP 244          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: Y1954_ARCFU (Putative amidase AF_1954 OS=Archaeoglobus fulgidus GN=AF_1954 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.699e-26
Identity = 82/249 (32.93%), Postives = 122/249 (49.00%), Query Frame = 2
Query:   50 LDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKS 796
            +D  +    G+I P  + E  +  + E  NP  K++ F+  NE+ I +         KK +  + L G+ IA+KD ++     TT  +K+     P   DA  V RL+  GA+++GKTNM E G      NP +G  RNP+D S+                + PVA G DGGGS+R+PA+ CG+ G KP+FGR+P    LP+   +   G L   VED  ++   + G     +   SLP   F  LK+
Sbjct:    5 VDIVEKLKGGEIKPAELVEECLEKI-ERLNP--KINAFVTLNEKAIEEA--------KKADVSTPLAGLPIAIKDNVETRGIRTTYCSKFYENYVP-EEDAVLVERLKKAGAVIIGKTNMPEFGLIAYTDNPMFGPTRNPWDLSRTVGGSSGGSAAAVAAGILPVASGNDGGGSIRIPASFCGLYGLKPSFGRVPCYPSLPIFIGLHSEGFLTRYVEDTALMLDLVKG--WDIRDVKSLPDEEFSYLKA 239          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.699e-26
Identity = 69/207 (33.33%), Postives = 107/207 (51.69%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  F+    +  L+ A +   +  K E I +L G+ I +KD +  +   TT G+K L    P   ++    +L+  GA++VGKTN+ E   G+S  N  Y V  NP+D S++                C VALG D GGS+R PA+LCGVVG KPT+G +   G++    ++  +G  A  V+DA ++  AI G  P    +++ P
Sbjct:   35 KVKSFLQVTADHALETAKKVDEKIAKNEEIGLLAGIPIGIKDNMCTTGIKTTCGSKILANFVP-PYESTVTQKLKDAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLSRVPGGSSGGSAAAVAASECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARNVQDAAILLGAIAGYDPKDSTSINTP 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRCO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces coelicolor GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 77/261 (29.50%), Postives = 124/261 (47.51%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            T  + +   +SG++T   V E  +  +        K+  F++ + E  L QA     + ++GE +  L GV +A+KD       PTT G+K L    P   DA    RL+    +++GKTNM E   G+S  N  YG   NP+D +KI                 P+A+G D GGS+R PA++ G VG KPT+G +   G++  + ++   G  A TV DA +++  I G  P    ++  P  +        S+  +++G
Sbjct:    8 TAAEIAAKIASGELTAVQVTEAHLARIEAVDE---KVHAFLHVDREGALAQARAVDEKRERGEKLGPLAGVPLALKDIFTTEGIPTTVGSKILEGWIP-PYDATVTKRLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLTKIPGGSGGGSSAALAAFQAPLAIGTDTGGSIRQPASVTGTVGVKPTYGGVSRYGMVAFSSSLDQGGPCARTVLDAALLHEVIAGHDPMDSTSIDAPVPAVVEAARNGSVDGMRVG 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRAW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces avermitilis GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 80/265 (30.19%), Postives = 130/265 (49.06%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSAT--SISAIKLG 826
            R T  + +   +SG++T   V E  +  +        K+  F++ + E  L QA     + ++GE +  L GV +A+KD       PTT G+K L    P   DA    +L+    +++GKTNM E   G+S  N  YG   NP+D S+I                 P+A+G D GGS+R PAA+ G VG KPT+G +   G++  + ++   G  A TV DA +++  I G  P    ++  P    P++++A   S+  +++G
Sbjct:   10 RLTAAEIAAKVASGELTAVQVTEAHLARIDAVDE---KVHAFLHVDREGALAQARAVDEKRERGEKLGPLAGVPLALKDIFTTEGIPTTVGSKILEGWIP-PYDATLTKKLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLSRIPGGSGGGSSAALASFEAPLAIGTDTGGSIRQPAAVTGTVGVKPTYGAVSRYGMVAFSSSLDQGGPCARTVLDAALLHEVIAGHDPLDSTSIDAPVP--PVVEAARNGSVEGMRVG 268          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SALAI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinispora arenicola (strain CNS-205) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 75/225 (33.33%), Postives = 114/225 (50.67%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP---KVSFPLLKSATSISAIKLG 826
            F++ + E  L  A     R   GEP+  L GV +AVKD +     PTT G++ L   RP   D+  V RLR  G +++GKTNM E   G+S     +G   NP+D S+I                 P+++G D GGS+R P A+ G VG KPT+G     G++  + ++   G  A TV DA +++ AI G  PS   ++  P    V+   L ++  ++ ++LG
Sbjct:   44 FLHVDTEGALDAARAVDARRAAGEPLGPLAGVPVAVKDVLTTKGIPTTAGSRILAGWRP-PYDSTIVRRLRAAGTVMLGKTNMDEFAMGSSTEYSAFGPTHNPWDLSRIPGGSGGGSAAALAAYETPLSIGSDTGGSIRQPGAVTGTVGVKPTYGGTSRYGLVAFSSSLDTPGPCARTVLDAALLHEAIGGHDPSDSTSIPAPVPDVVAAARLGASGDLAGVRLG 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_KINRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 80/271 (29.52%), Postives = 126/271 (46.49%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMK-----MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSAT-SISAIKLG 826
            RW     S+A  +G+++   V    +  +     P        +  F++ + E  L +A +       G  +  L GV I VKD +     PTT G++ L    P   DA  V  L   G +++GKTNM E   G++  +  YGV RNP+DP++I                 P+ +G D GGS+R PAA+ G VG KPT+G +   G++ L  ++   G  A TV D  +++A I G  P  S     ++P V       AT  ++ +++G
Sbjct:   10 RWDAARLSEALRAGEVSAEEVTRAHLDRIDAVDGPTSGAGETGVHAFLHVDHEGALARARQIDADRAAGAELGPLAGVPIGVKDVLTTKGLPTTAGSRMLQGWVP-PYDATVVRELHAAGLVVLGKTNMDEFAMGSTTEHSAYGVTRNPWDPTRIPGGSGGGSAAALAAFEAPLTIGSDTGGSIRQPAAVTGTVGVKPTYGAVSRYGLIALASSLDQAGPCARTVLDTALLHAVIAGHDPYDSTSIPAAVPDVVGAARLGATGDLAGVRVG 279          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_SULSY1.959e-2630.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_GEOKA1.959e-2635.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_NATTJ4.364e-2630.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_BACST4.364e-2635.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
Y1954_ARCFU5.699e-2632.93Putative amidase AF_1954 OS=Archaeoglobus fulgidus... [more]
GATA_CYAA55.699e-2633.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_STRCO7.444e-2629.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRAW7.444e-2630.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SALAI7.444e-2633.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_KINRD7.444e-2629.52Glutamyl-tRNA(Gln) amidotransferase subunit A OS=K... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
back to top