FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ACAM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 73/216 (33.80%), Postives = 107/216 (49.54%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLL 790
            K+  F+    +  L QA +   +   GE I +L G+ I +KD +      TT G+K L    P   ++    +L   GA++VGKTN+ E   G+S  N  Y V  NP+D S++                C V++G D GGS+R PAALCGVVG KPT+G +   G++    ++  +G    TVEDA ++   I G  P  S    V +P  S  L+
Sbjct:   35 KLHSFLAITADQALAQAKQVDAQLAAGEEIGLLAGIPIGIKDNMCTKGIATTCGSKILQNFIP-PYESTVTQKLAAAGAVMVGKTNLDEFAMGSSTENSAYQVTGNPWDVSRVPGGSSGGSAAAVAADECVVSIGSDTGGSIRQPAALCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGRTVEDAAILLQEIAGYDPQDSTSLKVEIPDYSKSLI 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROVI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 79/261 (30.27%), Postives = 122/261 (46.74%), Query Frame = 2
Query:   80 DITPRMVA-----ERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            D+ PR++A     E  +    E        + ++    ++ +++A     + ++G     L G+ +A+KD I     P T  +K L   R    DA  + RL    AI +GKTNM E   G+S  N  +G  +NP+DPS++               LC VALG D GGSVR PA  C VVG KPT+GRI   G++    +   +G+L+ +  DA +V   + G  P    + S     +    S  S+  +K+G    +FN
Sbjct:    8 DLRPRLLAGEVSCEEVVRVYLERIERHGDDNIYLTVFRDEAIERAAALDRKLREGGEPGRLFGLPMAIKDNISMDGAPLTCASKMLEGYRSVY-DATVIRRLFDEDAIFLGKTNMDEFAMGSSNENSAFGPVQNPFDPSRVPGGSSGGSAAAVAAGLCMVALGSDTGGSVRQPAGFCDVVGLKPTYGRISRYGLVAFASSFDQIGVLSHSSMDAALVLGVMAGSDPHDATSSSHAVSDYCSEVSGVSVKGLKIGVPKEFFN 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROMT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 82/268 (30.60%), Postives = 127/268 (47.39%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            T  D  +   SG+++ + + +  I  + E    P   SF I N E   L +A     +   G+ +  L G+ IA+KD +      TT  +K L    P   ++    +L   GAI++GKTNM E   G+S     +G   NP++ +K+               LC  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  A  V DA  +   I+G       TV +P  ++ L   + SI  +K+G  D  F+
Sbjct:    2 TFEDLRQKLKSGEVSSKELVQEKINRINELD--PTLNSFLIVNTEL-ALSKAEHIDKQIASGDHLPPLSGIPIAIKDNLCTKGIKTTCASKILDNFVP-PYESTVTKKLLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANNVSDAAEILQVISGKDELDSTTVDIPVPNY-LETLSKSIKGMKIGLIDNCFD 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 82/268 (30.60%), Postives = 127/268 (47.39%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            T  D  +   SG+++ + + +  I  + E    P   SF I N E   L +A     +   G+ +  L G+ IA+KD +      TT  +K L    P   ++    +L   GAI++GKTNM E   G+S     +G   NP++ +K+               LC  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  A  V DA  +   I+G       TV +P  ++ L   + SI  +K+G  D  F+
Sbjct:    2 TFEDLRQKLKSGEVSSKELVQEKINRINELD--PTLNSFLIVNTEL-ALSKAEHIDKQIASGDHLPPLSGIPIAIKDNLCTKGIKTTCASKILDNFVP-PYESTVTKKLLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANNVSDAAEILQVISGKDELDSTTVDIPVPNY-LETLSKSIKGMKIGLIDNCFD 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: QRSL1_XENLA (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Xenopus laevis GN=qrsl1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 79/257 (30.74%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   77 GDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK--------------------ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPL 787
            G + P  + ++ ++ ++E+S     ++ +I   E+  LKQA E+  R+ +G+P+  LDG+ IA+KD    +   TT  ++ L K      +A  V +L   GA+L+GKTN+ E G G+   +  +G  RNP+  S+                    I                C +A+G D GGS R PA+ CGVVG KPT+G +   G++PL  ++ + GIL   V+DA  V   + G       TV  P   F L
Sbjct:   16 GQVKPTELCQKCLSLIKETSF----LNAYITITEDIALKQAAEADKRFAQGKPLGELDGIPIAIKDNFSTAGIETTCASRML-KGYVAPYNATVVQKLFDQGAVLMGKTNLDEFGMGSGSTDSIFGPVRNPWSYSRSYIEKRPISHHAAKDDSDWVIAGGSSGGSACAVSAGTCYLAIGSDTGGSTRNPASHCGVVGLKPTYGLVSRHGLIPLVNSMDIPGILTRCVDDAATVLGMLAGHDLYDSTTVQDPFQPFSL 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 77/208 (37.02%), Postives = 106/208 (50.96%), Query Frame = 2
Query:  161 FINNNEEDILKQATE----STLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            FI+ N E +LK+A E     TL+ K       L G ++AVK  I+   Y  +  +K L K    T DA  V +LR  GA++VG TNM E   G+SG    YG  +NP    +I               LC +A+G D GGS+R PA+ CG+VGFKP++G +   G+  L  +   +G L    EDALV+  AI G   S   ++  PK
Sbjct:   21 FIDVNGEKVLKEAEELEKNDTLKNKP------LYGKIVAVKSNINVKGYKISCASKTLEKYVG-TYDATVVKKLRSQGALIVGMTNMDEFAGGSSGETSCYGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIGPLTKNAEDALVLTNAIKGIDRSDSTSLETPK 221          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOTN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 72/209 (34.45%), Postives = 103/209 (49.28%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            K+  F+  NEE    +A E   +  KGE  + L G+ I +KD I      TT  +K L+   P   DA  + RL   GAI +GK NM E   G+S  N  + + RNP+D  ++                 P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +   I G  P+ S    + +P
Sbjct:   39 KVQAFLTLNEEQARAKAKELDDKLAKGEETNPLFGLPIGIKDNIVTKGLRTTCASKILYNFDPIY-DATVMERLNAAGAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITRTVEDNAYLLQVIAGVDPMDSTSANIDVP 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 70/207 (33.82%), Postives = 109/207 (52.66%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            FI  +    L+ AT +  R  +GE   +L G+ +A+KD +  S   TT  +K L    P T DA  V  L+  GA++VGKTN+ E G G+S  N  + + RNP++   +               +C  ALG D GGS+R PA+ CGVVG KP++GR+   G++    ++  +G +  TV+DA ++   I+G  P    + ++ K  F
Sbjct:   43 FITVDAAGALEAATAADERIARGEDAPLL-GIPLALKDLLCTSGVRTTCASKILENFVP-TYDATAVTLLKQAGAVIVGKTNLDEFGMGSSTENSAFHLTRNPWNLDHVPGGSSGGSAAAVAARMCTAALGTDTGGSIRQPASHCGVVGLKPSYGRVSRFGMVAYASSLDQIGPITRTVKDAALMMNVISGHDPKDSTSAAIDKPDF 247          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SALTO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 74/225 (32.89%), Postives = 113/225 (50.22%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP---KVSFPLLKSATSISAIKLG 826
            F++ + E  L  A +   R   GEP+  L GV +AVKD +     PTT G+K L   RP   D+  V RLR  G +++GKTNM E   G+S     +G   NP+D S+I                 P+++G D GGS+R P A+ G VG KPT+G     G++  + ++   G  A TV DA +++  I G  P    ++  P    V+   L ++  ++ ++LG
Sbjct:   44 FLHVDTEGALDAARDVDSRRAAGEPLGPLAGVPVAVKDVLTTKGVPTTAGSKILADWRP-PYDSTIVRRLRAAGTVMLGKTNMDEFAMGSSTEYSAFGPTHNPWDLSRIPGGSGGGSSAALAAYETPLSIGSDTGGSIRQPGAVTGTVGVKPTYGGTSRYGLVAFSSSLDTPGPCARTVLDAALLHEVIGGHDPLDSTSIPAPVPDVVAAARLGASGDLTGVRLG 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESVV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 68/193 (35.23%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLG 826
            GV + VKD +  +  PTT G++ L    P   DA  V RLR  GAI++GK NM E   G+S  N  Y   RNP+D +++                C  +LG D GGS+R PA+LCG VG KPT+GR+   G++    ++  +G +  TVEDA +V   I G           P   F   L S   ++ +++G
Sbjct:   72 GVPVTVKDALTTAGTPTTAGSRILEDFVPFY-DAFAVQRLREAGAIILGKNNMDEFAMGSSTENSAYKPTRNPWDTARVPGGSSGGSAASVAAGQCFASLGTDTGGSIRQPASLCGCVGLKPTYGRVSRFGLIAYGSSLDQIGPMTRTVEDAAIVMGVIAGHDKRDSTCADRPVEDFAAALASRHDLAGVRIG 263          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACAM17.444e-2633.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PROVI9.722e-2630.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROMT9.722e-2630.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM19.722e-2630.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
QRSL1_XENLA1.658e-2530.74Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_METMP1.658e-2537.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_GEOTN1.658e-2534.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_DESAH1.658e-2533.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_SALTO2.166e-2532.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_DESVV2.166e-2535.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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