FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SULDN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 53/163 (32.52%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            DGV IA+KD I    +  T G+  L   + P   +A  + ++   G    G+TNM E   G++  +  YG   NP++   +               L   ALG D GGS+R PA+ CG+VG KPT+GR+   G+     ++  +G +   VEDA ++Y  I+G
Sbjct:   43 DGVPIAIKDNIQVKDWSVTSGSNILQGYIAPY--NATVIEKMLSAGLSPFGRTNMDEFAMGSTTESSFYGKTLNPHNKDCVPGGSSGGSAAAVGAGLAIAALGSDTGGSIRQPASFCGIVGMKPTYGRVSRYGLGAYASSLDQIGPMTQNVEDAAILYDIISG 203          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRS7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 62/191 (32.46%), Postives = 91/191 (47.64%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI    E  LKQA  + L  K  +P +V+ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D S++                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV +   + + I G
Sbjct:   43 FITIACEAALKQA--AALDAKGIDPDNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATAVANAYDKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHSRVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGAVSRYGLIAFGSSLDQIGPFAPTVRENAQLLSVIAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRE4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus equi subsp. equi (strain 4047) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 62/191 (32.46%), Postives = 91/191 (47.64%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI    E  LKQA  + L  K  +P +V+ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D S++                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV +   + + I G
Sbjct:   43 FITIACEAALKQA--AALDAKGIDPDNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATAVANAYDKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHSRVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGAVSRYGLIAFGSSLDQIGPFAPTVRENAQLLSVIAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: DUR1_SACKL (Urea amidolyase OS=Saccharomyces kluyveri GN=DUR1,2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 74/268 (27.61%), Postives = 117/268 (43.66%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            W+  D+   +  G  TP       ++ ++   + P   ++    NE ++  Q     L+ K  +    L GV IAVKD ID    PTT       +  P + D+  V  L+  GAI++GKTN+ +   G  G    YG     +    ++              + P+ALG D  GS R+PAAL  ++G KPT G    SGV+P   ++  V + A  + DA   +  +  P   +    S P  S PL K   +++ I + K   W+
Sbjct:    8 WSAQDWIDFH--GKSTPEHSYNTLLSLLKSQKSAPEDPAWISLINEANLAHQW--KVLQSKANKQQLPLYGVPIAVKDNIDSKGSPTTAACP-AFEYNP-SADSTVVALLKDAGAIVIGKTNLDQFATGLVGTRSPYGKTPCVFSDKHVSGGSSAGSASAVGRGIVPIALGTDTAGSGRVPAALNNLIGLKPTKGLFSCSGVVPACKSLDCVSVFAMNLSDAERCFKVMAKP-DLENDEYSRPLPSNPLQKYPKNVT-IAIPKEVPWY 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKSILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus agalactiae serotype V GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI  ++E  + QA E  +  K  +  +V+ G+ +AVKD I      TT  +K L+   P   DA  V +L     I++GK NM E   G S    ++    N +D SK+                  ++LG D GGS+R PA+  G+VG KPT+GR+   G+     ++  +G ++ TV++   +   I+G
Sbjct:   43 FITISDEMAIAQAKE--IDDKGIDADNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATAVEKLYAKDMIVIGKANMDEFAMGGSTETSYFKKTNNAWDHSKVPGGSSGGSAAAVASGQVRLSLGSDTGGSIRQPASFNGIVGMKPTYGRVSRFGLFAFGSSLDQIGPMSQTVKENAQLLTVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus agalactiae serotype Ia GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI  ++E  + QA E  +  K  +  +V+ G+ +AVKD I      TT  +K L+   P   DA  V +L     I++GK NM E   G S    ++    N +D SK+                  ++LG D GGS+R PA+  G+VG KPT+GR+   G+     ++  +G ++ TV++   +   I+G
Sbjct:   43 FITISDEMAIAQAKE--IDDKGIDADNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATAVEKLYAKDMIVIGKANMDEFAMGGSTETSYFKKTNNAWDHSKVPGGSSGGSAAAVASGQVRLSLGSDTGGSIRQPASFNGIVGMKPTYGRVSRFGLFAFGSSLDQIGPMSQTVKENAQLLTVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACLM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 62/191 (32.46%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+   EE  LK+A  + +  +   P  V DG+ I VKD I      TT  +K L    P   +A    +L   G I +GK NM E   G SG N      +N +D +K+                  ++LG D GGS+R PAA  G+VG KPT+GR+   G++    ++  +G L  TVE+   +   I+G
Sbjct:   43 FLKVTEEKALKEA--AAIDARGINPDVVTDGISIGVKDNIVTEGIETTAASKILGGWIP-PYNATVANKLSQSGLITIGKLNMDEFAMGGSGENSSIKPTKNAWDQTKVPGGSSSGSAASVASGEVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTPTVEENAQLLNVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_JANSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Jannaschia sp. (strain CCS1) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 62/235 (26.38%), Postives = 109/235 (46.38%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            T+ D   A   G++T   + +  ++A+ ++      +  F++   +  L++A  +  R  +G+   +  G+ + +KD       P+   ++ L   +P   ++    +LR  GA+++GK NM E   G+S     YG A NP+     D +                 LC  A G D GGS+R PAA  G+VG KPT+GR    G++    ++   G +  TV DA ++  A+ G
Sbjct:    8 TIADARDALRKGEVTSVDLTQACLSAIDQAD----ALGTFVHKTPDLALERAKAADARIAEGDAPDMC-GIPVGIKDLFCTEGVPSQAASRILDGFKP-EYESTVSGKLRDAGAVMLGKLNMDEFAMGSSNETSVYGNAVNPWRAGNSDAALTPGGSSGGSASAVAGDLCLAATGTDTGGSIRQPAAFTGIVGLKPTYGRCSRWGIVAFASSLDQAGPMTKTVRDAAIMGRAMMG 236          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M28 GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_SULDN1.273e-1732.52Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRS71.273e-1732.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRE41.273e-1732.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
DUR1_SACKL1.273e-1727.61Urea amidolyase OS=Saccharomyces kluyveri GN=DUR1,... [more]
GATA_STRPZ1.662e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRA51.662e-1730.37Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRA11.662e-1730.37Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_LACLM1.662e-1732.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_JANSC1.662e-1726.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=J... [more]
GATA_STRPM2.171e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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