FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M18 GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M3 GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDSDNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACLS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 62/191 (32.46%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+   EE  LK+A  + +  +   P  V DG+ I VKD I      TT  +K L    P   +A    +L   G I +GK NM E   G SG N      +N +D +K+                  ++LG D GGS+R PAA  G+VG KPT+GR+   G++    ++  +G L  TVE+   +   I+G
Sbjct:   43 FLKVTEEKALKEA--AAIDARGINPDVVTDGISIGVKDNIVTEGIETTAASKILGGWIP-PYNATVANKLSQSGLITIGKLNMDEFAMGGSGENSSIKPTKNVWDQTKVPGGSSSGSAASVASGEVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTPTVEENAQLLNVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            L GV IA+KD I  +   TT  +  L+   P   ++  V +L+   A ++GKTNM E   G+S    ++G  +NP++ +K+                   ALG D GGS+R PA+  G+ G KPT+GR+   G++    ++  +G+++  V+D+  V   I G
Sbjct:   62 LAGVPIAIKDNIITNGLKTTAASHILYNFEPVY-ESTVVAKLKAAQATIIGKTNMDEFAMGSSTETSYFGDTKNPWNLNKVPGGSSGGSAAAVASGEVVAALGSDTGGSIRQPASFNGIFGIKPTYGRVSRWGLIAFASSLDQIGVMSKRVKDSAEVLNVIAG 223          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus suis (strain 05ZYH33) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 59/191 (30.89%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+   E+  L QA  + L  K  +  +V+ G+ +AVKD I      TT  +K L+   P   DA  V +      I+VGKTNM E   G S  N  +   +N +D +K+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  + TV++   +   I+G
Sbjct:   43 FLTITEDAALAQA--AALDEKGIDADNVMAGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVAQAYAKDMIIVGKTNMDEFAMGGSNENSAFKPTKNAWDQTKVPGGSSGGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGTVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRS2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus suis (strain 98HAH33) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 59/191 (30.89%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+   E+  L QA  + L  K  +  +V+ G+ +AVKD I      TT  +K L+   P   DA  V +      I+VGKTNM E   G S  N  +   +N +D +K+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  + TV++   +   I+G
Sbjct:   43 FLTITEDAALAQA--AALDEKGIDADNVMAGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVAQAYAKDMIIVGKTNMDEFAMGGSNENSAFKPTKNAWDQTKVPGGSSGGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGTVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGTLTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRPF2.171e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPC2.171e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPB2.171e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP82.171e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP32.171e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_LACLS2.171e-1732.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LACDA2.171e-1731.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_STRSY2.835e-1730.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRS22.835e-1730.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPD2.835e-1732.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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