FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRU0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 57/191 (29.84%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI   EE  L QA    +  +  +P +V+ G+  AVKD I      TT  +K L+   P   +A  + +      I++GKTNM E   G S    ++   +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  + TV++   +   I G
Sbjct:   43 FITLAEEKALSQA--EAIDARGIDPNNVMSGIPFAVKDNISTEGILTTAASKMLYNYEPIF-NATAIEKAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGIVGMKPTYGTVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVIAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSYCK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter cryohalolentis (strain K5) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 59/205 (28.78%), Postives = 93/205 (45.37%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            K++ FI +  E    QA  +     +G+   +L GV +A KD        TT G+K LH  + P   DA  V  +   G I +GK NM E   G+   + +YG   NP++ + +                 PVA G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G +  +  D   +   + G  P    ++
Sbjct:   40 KINSFITHTSETARAQAKAADEMRVQGDKRPLL-GVPMAHKDIFCTQGVLTTCGSKMLHNFISPY--DATIVTNIDKAGMISLGKLNMDEFAMGSDNESSYYGAVHNPWNIAHVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGSMGRSAMDCAFLLQPMIGHDPRDATSI 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHRVO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromobacterium violaceum GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 63/231 (27.27%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            T+   S+  ++  ++   +A +++  + E+ NP  +++  +  + E  L +A  +  R   G+    L GV +  KD      + T+ G++ L   V P +  A  V +    G + +G+ NM E   G+S  N  YG  +NP+D + I               L PVA   D GGS+R PA+ CGV G KPT+G +   G++    ++   G +A T ED  ++   + G
Sbjct:    5 TLKQLSQQLAAKQVSSVELASQYLDRI-EALNP--QLNAIVTVDREKTLAEARAADARLAAGDA-RALTGVPLVHKDLFCQQGWKTSCGSRMLDNFVSPYS--AHVVEQCAAAGMVTLGRANMDEFAMGSSNENSFYGAVKNPWDLNAIPGGSSGGSAAAVAARLAPVATATDTGGSIRQPASHCGVTGIKPTYGVVSRYGMVAYASSLDQGGPIAQTAEDCALMLNVMAG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAUCR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Caulobacter crescentus GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 64/230 (27.83%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXX-----LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            ++ +I    +  +  A +S  R   GE    L+G  + VKD    +   TT  +K L    P T ++    +L   GA+++GK N+ +   G+S    ++G   NP+     T                   LC  A   D GGS+R PAA  G VG KPT+GR    GV+    ++   G +A TVEDA ++  +++G  P    ++ +P   F       S+  +K+G
Sbjct:   39 LNAYILETPDKAIDMAAKSDARRALGEA-GPLEGAPLGVKDLFCTNGVRTTACSKILENFVP-TYESTVTSQLWRDGAVMLGKLNLDQFAMGSSNETSYFGPVTNPWRAQGSTKALTPGGSSGGSAAAVAADLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGVVAFASSLDQAGPIAKTVEDAALLLTSMSGHDPKDSTSLDIPVPDFTQF-VGKSVKGLKIG 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAUCN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 64/230 (27.83%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXX-----LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            ++ +I    +  +  A +S  R   GE    L+G  + VKD    +   TT  +K L    P T ++    +L   GA+++GK N+ +   G+S    ++G   NP+     T                   LC  A   D GGS+R PAA  G VG KPT+GR    GV+    ++   G +A TVEDA ++  +++G  P    ++ +P   F       S+  +K+G
Sbjct:   39 LNAYILETPDKAIDMAAKSDARRALGEA-GPLEGAPLGVKDLFCTNGVRTTACSKILENFVP-TYESTVTSQLWRDGAVMLGKLNLDQFAMGSSNETSYFGPVTNPWRAQGSTKALTPGGSSGGSAAAVAADLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGVVAFASSLDQAGPIAKTVEDAALLLTSMSGHDPKDSTSLDIPVPDFTQF-VGKSVKGLKIG 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BREBN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 62/224 (27.68%), Postives = 104/224 (46.43%), Query Frame = 2
Query:   65 AYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKG-EPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            A  + +I+   + +  I +++E      ++   ++ +EE  L  A +   R  KG E + +L G+   +KD +      TT  +K+L    P   D     +++   +++V K NM E   G S  N  +  A+NP++   +                    LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED+  V  AI G
Sbjct:   14 ALRAKEISVTDLVQASIASIKEHDG---EIKSVLHVDEEGALAHARQLDERLVKGNEELGLLYGLPAGLKDNLVTKDIRTTCASKFLANYDP-VHDGTVSKKVKDADSVIVAKLNMDEFAMGGSNENSGFFPAKNPWNTDYVPGGSSGGSAAAMAARHFYYTLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPVTKNVEDSAYVLQAIAG 233          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSYA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 59/205 (28.78%), Postives = 92/205 (44.88%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            K++ FI +  E    QA  +     +G+   +L GV +A KD        TT G+K LH  + P   DA  V  +   G I +GK NM E   G+   + +YG   NP++   +                 PVA G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G +  +  D   +   + G  P    ++
Sbjct:   40 KINSFITHTSETARTQAKAADEMRVQGDKRPLL-GVPMAHKDIFCTQGVLTTCGSKMLHNFISPY--DATIVTNIDKAGMISLGKLNMDEFAMGSDNESSYYGAVHNPWNIGHVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGSMGRSAMDCAYLLQPMIGHDPRDATSI 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_FRAP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 59/221 (26.70%), Postives = 99/221 (44.80%), Query Frame = 2
Query:   74 SGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            SG++T   + ++++  +++       ++  I   E + LK+A  +      G+  S+L G+ I  KD        TT  +K L   V P   D+      +  G + +GK NM E   G++  + +YG   NP+D  ++                 PV+ G D GGSVR PA+ CG+   KPT+G     G++    +    GI     ED  ++  AI+G
Sbjct:   13 SGEVTAVELTKQYLAKIKDQDK---SINSVITLCEAEALKEAENADAIISAGKQ-SLLTGIPILHKDLFCTKGIKTTAASKMLDNFVAPY--DSTVTKNCKDQGMVTLGKLNMDEFAMGSTNEHSYYGAVSNPWDLDRVPGGSSGGSAAAVAAGFAPVSTGSDTGGSVRQPASFCGLTAMKPTYGSTSRFGMVAFASSFDQAGIFGHYAEDVAIMLDAISG 227          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_XANP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 73/266 (27.44%), Postives = 113/266 (42.48%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            T+    +  + G+ T   + E ++ A+ E + P   ++ ++    E  L+ A ES  R   GE    L+G+ + +KD        TT   K L    P   ++     L   GA+L+GK N  E   G+S     +G   +P+     +   +               LC  A G D GGS+R PAA  G VG KPT+GR    G++    ++   G  A TV DA V+  ++ G  P     V+ P   +     A SI   K+G
Sbjct:    8 TLTQAREGLAQGEFTSVELTEAYLKAM-EQARP---LNAYVLETPEIALEMAKESDRRIASGET-GPLEGIPLGIKDMFATEGVRTTACAKILDNFIP-QYESTVTSHLWRDGAVLLGKLNNDEFAMGSSNETSAFGPVVSPWRRDGDETPLVPGGSSGGSAAAVAAFLCAGATGTDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAFASSLDQAGPFARTVNDAAVLLKSMAGYDPKDSTCVNRPVPDYEEAVGA-SIKGKKIG 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MAGSA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=gatA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 61/216 (28.24%), Postives = 97/216 (44.91%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSK--ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            ++ FI    +  L+ A  S  R + G   S +DG+ I +KD        TT  +  L   +P   ++    +L+  GAI +GK N+ E   G+S    ++G   NP+    DP    +               +   A G D GGS+R PAA CG+ G KPT+GR    G++    ++   G +A TV D  ++  A+ G  P    +V++    F
Sbjct:   40 LNAFIVETPDLALEAAKASDARRQAGTAGS-MDGLPIGIKDLFCTEGVQTTAASHILEGFKP-PYESTVSGKLKAAGAISLGKLNLDEFAMGSSNQTSYFGAVENPWKKTSDPKAKLVPGGSSGGSAAAVAARMVLGATGTDTGGSIRQPAAFCGITGIKPTYGRCSRFGIVAFASSLDQAGPMARTVRDCAIMLGAMAGHDPKDSTSVNMAVPDF 253          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRU01.077e-1629.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSYCK1.077e-1628.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CHRVO1.077e-1627.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAUCR1.077e-1627.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAUCN1.077e-1627.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BREBN1.077e-1627.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_PSYA21.407e-1628.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_FRAP21.407e-1626.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_XANP21.838e-1627.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=X... [more]
GATA_MAGSA1.838e-1628.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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