FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESVH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 68/193 (35.23%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLG 826
            GV + VKD +  +  PTT G++ L    P   DA  V RLR  GAI++GK NM E   G+S  N  Y   RNP+D +++                C  +LG D GGS+R PA+LCG VG KPT+GR+   G++    ++  +G +  TVEDA +V   I G           P   F   L S   ++ +++G
Sbjct:   72 GVPVTVKDALTTAGTPTTAGSRILEDFVPFY-DAFAVQRLREAGAIILGKNNMDEFAMGSSTENSAYKPTRNPWDTARVPGGSSGGSAASVAAGQCFASLGTDTGGSIRQPASLCGCVGLKPTYGRVSRYGLIAYGSSLDQIGPMTRTVEDAAIVMGVIAGHDKRDSTCADRPVEDFAAALASRHDLAGVRIG 263          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANASK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter sp. (strain K) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 76/207 (36.71%), Postives = 100/207 (48.31%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  F+  + +     A  +  R  +GE  S LDGV +AVKD       PTT G++ L    P   DA  V RL   GA++VGK NM E   G+S  N  Y    NP+D S+                    +LG D GGS+R PAA CGVVG KPT+GR+   GV+    ++  VG LA  V DA +V   I G  P    + + P
Sbjct:   44 KLGAFLAVSADRARAAARAADARAARGERRSELDGVPVAVKDIFVTKGVPTTAGSRILEGYLP-PYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLAREVGDAALVLRTIAGHDPRDMTSSTRP 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 76/205 (37.07%), Postives = 105/205 (51.22%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYK-KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            FI+ N E +LK+A E       K +P   L G ++AVK  I+   Y  +  +K L K    T DA  V +LR  GA++VG TNM E   G+SG    YG  +NP    +I               LC +A+G D GGS+R PA+ CG+VGFKP++G +   G+  L  +   +G L    EDALV+  AI G   S   ++  PK
Sbjct:   21 FIDVNSEKVLKEAEELEKNDDLKNKP---LYGKIVAVKSNINVKGYKISCASKTLEKYVG-TYDATVVKKLRSQGALIVGMTNMDEFAGGSSGETSCYGPTKNPAALDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIGPLTKNAEDALVLTNAIKGIDRSDSTSLETPK 221          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CYAP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 69/207 (33.33%), Postives = 103/207 (49.76%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  F+    E  L QA     +   G  I +L G+ IA+KD +     PTT G+K L    P   ++    RL   GA++VGKTN+ E   G+S  N  Y +  NP+D  ++                  +ALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G  A  VEDA ++  AI G  P    ++++P
Sbjct:   35 KVHAFLTLTAEQALAQAERVDQQIATGTEIGLLAGIPIAIKDNLCTKGIPTTCGSKILQGFIP-PYESTVTSRLAAAGAVMVGKTNLDEFAMGSSTENSAYQLTANPWDLQRVPGGSSGGSAAAVAAGETLIALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFATNVEDAALLLGAIAGHDPQDSTSLNVP 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 76/234 (32.48%), Postives = 115/234 (49.15%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLG 826
            E+  P +K   F++   +  + QA     R   GE IS+L G+ I +KD +     PTT  +K L    P   ++    RL   GA+ VGKTN+ E   G+S  N  Y    NP+D +++                C VALG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G  + +VED  ++  AI G  P    ++ +    +   LK   S++ IK+G
Sbjct:   30 ETLEPQLKS--FLHVTADQAIAQAKAVDQRIAAGEEISLLAGIPIGIKDNLCTRGIPTTCASKILQGFVP-PYESTVTQRLAEAGAVAVGKTNLDEFAVGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSRSVEDTAILLGAIAGHDPKDATSLKVEVPDYTQFLK--PSLAGIKVG 258          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNFM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 67/176 (38.07%), Postives = 94/176 (53.41%), Query Frame = 2
Query:  215 RYKKGEP---ISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            R+ +GE     S L G+ +A+KD +      TT G++ L    P   D   + RLR  GAI +GKTNM E   G+S  N  YGV RNP+D  ++               LC  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +   VEDA ++  AI G
Sbjct:   57 RFDRGERDLHASPLAGIPLAIKDVLCMQGTVTTCGSRILENFVP-PYDGTVIARLREAGAIFLGKTNMDEFAMGSSTENSAYGVTRNPWDRERVPGGSSGGSAAAVAADLCSGSLGTDTGGSIRQPASFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITKDVEDAAILLQAIAG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYMTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Symbiobacterium thermophilum GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 74/227 (32.60%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEP-ISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGP 736
            ++ + +G+++   +AE  ++ + +       +  FI    + ++++A +   R K G+  +  L GV IAVKD I  S   TT  ++ L K      DA  V RLR  GA+++GK NM E   G+SG +  +GV RNP+D  ++                 P+ALG D GGS+R PAA  G+VG KPT+G +   GV+    ++  VG +   VED   ++  I GP
Sbjct:    8 NRLFLAGELSAVEIAESALSRIAQVEPA---VGAFITVAADHVIERAKKLDARRKAGDTELGPLAGVPIAVKDNICTSGMETTCASRIL-KGYVSPFDATVVERLRAAGAMIIGKANMDEFAMGSSGESSAFGVTRNPWDLERVPGGSSSGSAAAVAAGEAPLALGTDTGGSIRQPAAFTGIVGLKPTYGYVSRYGVVAFASSLDQVGPMGRDVEDVARLFEVIAGP 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NOSP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 71/212 (33.49%), Postives = 107/212 (50.47%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFP 784
            K+  F+    E  L+QA     +   GE I +L G+ + +KD +     PTT  ++ L    P   ++    +L   GA++VGKTN+ E   G+S  N  Y V  NP++ S++                C VALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G  A TVEDA ++  AI G  P    ++   KV+ P
Sbjct:   35 KLHSFLCVTAERALEQAGAVDAKIAAGEEIGLLAGIPVGIKDNLCTKGIPTTCASRILENFVP-PYESTATQKLADAGAVMVGKTNLDEFAMGSSTENSAYQVTANPWNLSRVPGGSSGGSAAAVSSQECVVALGSDTGGSIRQPASFCGVVGMKPTYGLVSRYGLVAYASSLDQIGPFANTVEDAAILLNAIAGHDPKDSTSL---KVAIP 242          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GLOVI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Gloeobacter violaceus GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 75/230 (32.61%), Postives = 112/230 (48.70%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            F+    E  L  A     +  +GE   +L GV +AVKD +     PTT  +K L   RP   ++    RL   GA+++GKTN+ E   G+S  N  +G  RNP+D  ++                   +LG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G    TVEDA +V  AI G  PL S    V++P     L+   + +  +K+G    +F
Sbjct:   39 FLRLTPERALAAAEAVDAKIARGEDPGLLAGVPVAVKDNLCMVGIPTTCASKILENYRP-PYESTVTRRLEEQGALIIGKTNLDEFAMGSSTENSAFGPTRNPWDLGRVPGGSSGGSAAAVAACEAVASLGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLIAFASSLDQIGPFTRTVEDAALVLQAIAGHDPLDSTSLAVNVPDYRQALI---SDLKGVKVGFVKEFF 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 81/252 (32.14%), Postives = 117/252 (46.43%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRES---SNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLG 826
            +T  + A   + A  E    S P  K    I N+E   LKQA E  +     +    L GV + +KD +  +  PTT G+K L    P   D+  V +L+  GAI+VGK NM E   G++  N  Y    NP+D S++                C  ALG D GGS+R+PA+ CG VG KPT+GR+   G++    ++  +G +  TVEDA  V   I G       +   P   F   L+    +S + +G
Sbjct:   17 MTKEVTATEAVKACLEQIAKSEPETKALLHICNDEA--LKQAEE--MDAAGPDASKPLWGVPVVIKDALATNGIPTTAGSKILEGFTPFY-DSTAVAKLKEAGAIIVGKANMDEFAMGSTTENSAYQTTTNPWDASRVPGGSSGGSGATVAAGQCYAALGTDTGGSIRLPASFCGCVGVKPTYGRVSRYGMIAYGSSLDQIGPMTRTVEDAARVLNVIGGHDQRDSTSAEQPMEDFVAALEERKDLSGLTIG 263          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_DESVH2.166e-2535.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_ANASK2.166e-2536.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METM52.829e-2537.07Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAP42.829e-2533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNP63.694e-2532.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNFM3.694e-2538.07Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYMTH3.694e-2532.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NOSP73.694e-2533.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_GLOVI3.694e-2532.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_DESAD3.694e-2532.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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