FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 68/205 (33.17%), Postives = 103/205 (50.24%), Query Frame = 2
Query:  230 EPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            E I +L G+ I +KD +     PTT G++ L    P   ++    +L+  GA++VGKTN+ E   G+S  N  Y V  NP+D  ++                C VALG D GGS+R PA+LCGVVG KPT+G +   G++    ++  +G    TVED  +V  AI G       ++ LP   +    +  S+  +K+G  +  F
Sbjct:   62 EEIGLLAGIPIGIKDNMSTKGIPTTCGSRILENFIP-PYESTVTQKLQEIGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLERVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYGSSLDQIGPFGRTVEDVAIVLGAIAGYDAKDSTSLKLPIPDYTTFLN-PSLKGVKIGIIEETF 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANAD2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 76/207 (36.71%), Postives = 100/207 (48.31%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K+  F+  + +     A  +  R  +GE  S LDGV +AVKD       PTT G++ L    P   DA  V RL   GA++VGK NM E   G+S  N  Y    NP+D S+                    +LG D GGS+R PAA CGVVG KPT+GR+   GV+    ++  VG LA  V DA +V   I G  P    + + P
Sbjct:   44 KLGAFLAVSADRARAAARAADARAARGERRSELDGVPVAVKDLFVTKGVPTTAGSRILEGWLP-PYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLAREVGDAALVLRTIAGHDPRDMTSSTRP 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ACIBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacteria bacterium (strain Ellin345) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 76/256 (29.69%), Postives = 124/256 (48.44%), Query Frame = 2
Query:   86 TPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            T   +AE F   +        +++ ++  + +  L QA +      +G+ +  L G+ +A+KD I      TT G+K L + + P   DA  V +L   GA+++GKTN  E   G+S  N  YG  RNP D S++                   +LG D GGS+R PA+ CGVVG  PT+GR+   G++    ++  +G  A  V+DA ++   I G  P+ +    V++PK S  + K    +  +K+G    +F
Sbjct:   21 TATAIAESFYKKIEAEDG---EINAYLTLSRDRALAQAAKIDAIADRGDDLPRLAGLPVAIKDVISTKGVRTTAGSKILEEFIAPY--DATVVQKLEAAGAVILGKTNCDEFAMGSSNENSAYGPVRNPRDKSRVPGGSSGGSAAVVAAGTAVTSLGSDTGGSIRQPASFCGVVGLMPTYGRVSRYGLIAFASSLDHIGPFAKDVKDAAIMLEVIAGRDPMDATSAEVAVPKYSDEIGK---PVRGMKIGVAKEYF 268          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNE7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 76/234 (32.48%), Postives = 115/234 (49.15%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF-PLLKSATSISAIKLG 826
            E+  P +K   F++   +  + QA     R   GE IS+L G+ I +KD +     PTT  +K L    P   ++    RL   GA+ VGKTN+ E   G+S  N  Y    NP+D +++                C VALG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G  + +VED  ++  AI G  P    ++ +    +   LK   S++ IK+G
Sbjct:   30 ETLEPQLKS--FLHVTADQAIAQAKAVDQRIAAGEEISLLAGIPIGIKDNLCTRGIPTTCASKILQGFVP-PYESTVTQRLAEAGAVAVGKTNLDEFAMGSSTENSAYQTTANPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSRSVEDTAILLGAIAGHDPKDATSLKVEVPDYTQFLK--PSLAGIKVG 258          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 73/204 (35.78%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            FI+ N E +LK+A E  L          L G ++AVK  I+   Y  +  +K L      T DA  V +LR  GA++VG TNM E  +G+SG   ++G  +NP    +I               LC +A+G D GGS+R PA+ CG+VGFKP++G +   G+  L  +   +G L    EDALV+  AI G   S   ++  PK
Sbjct:   21 FIDVNSEKVLKEAEE--LEKNDALKNKPLYGKIVAVKSNINVKGYKISCASKTLDNYIG-TYDATVVKKLRSQGALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIGPLTKNAEDALVLTNAIKGIDRSDSTSLETPK 221          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CYAP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 74/224 (33.04%), Postives = 114/224 (50.89%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            F++   +  L+ A +   +    E I +L+G+ + +KD +     PTT G+K L    P   ++    +L+  GAI +GKTN+ E   G+S  +  Y V  NP+D S++                C VALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G  A TVEDA ++  AI G  P  S    V +P  +   LK    +S +K+G
Sbjct:   39 FLHITADQALESAKKVDAKIAAKEEIGLLEGIPVGIKDNMCTQGIPTTCGSKILENFVP-PYESTVTQKLKDSGAITLGKTNLDEFAMGSSTESSGYQVTANPWDLSRVPGGSSGGSAAAVASEECVVALGSDTGGSIRQPASYCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARTVEDAAILLGAIAGYDPKDSTSLNVEIPDYT-QFLK--PKLSKLKIG 258          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANADE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 74/191 (38.74%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  197 ATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            A  +  R  +GE  S LDGV +AVKD       PTT G++ L    P   DA  V RL   GA++VGK NM E   G+S  N  Y    NP+D S+                    +LG D GGS+R PAA CGVVG KPT+GR+   GV+    ++  VG LA  V DA +V   I G  P    + + P
Sbjct:   60 AKAADARAARGERRSELDGVPVAVKDLFVTKGVPTTAGSRILEGYLP-PYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLAREVGDAALVLRTIAGHDPRDMTSSTRP 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ACIC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 71/203 (34.98%), Postives = 103/203 (50.74%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            F+  + +  L  A     R   GE +  L GV +A+KD       PTT G+K L    P   DA  V ++R  G +++GKTNM E   G+S  N  +G  RNP+D S+I                 P+A+G D GGS+R PAA+ G+VG KPT+G +   G++  + ++   G  A TV DA  ++AAI G  P    ++  P
Sbjct:   44 FLYVDADGALTAARAVDARLAAGERLGPLAGVPLALKDVFTTRGMPTTCGSKILEGWIP-PYDATVVQKIRDAGIVILGKTNMDEFAMGSSTENSAFGPTRNPWDLSRIPGGSSGGSAAAVAAFEAPLAIGTDTGGSIRQPAAVTGIVGTKPTYGGVSRYGLVAFSSSLDQAGPFARTVLDAAYLHAAIAGHDPRDATSIDAP 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BRAHW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 74/243 (30.45%), Postives = 123/243 (50.62%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR-PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            T++   +   + +I    + +  I  + E +    K+  ++   +E+ L+QA ++  R   GE + +L GV +A+KD +    +  T  +K L   + P T  A  V RL   GAI++G+TNM E   G +    +YGV RNP + + +                   ALG D GGS+R PA+ CG+VG KPT+GR+P  G + +  ++  VG L   V+DA ++   I G  P +  T+++P
Sbjct:    7 TIIQIREKLKNKEIDAPTLVDSIIKNIEEDNKRDDKIYAYLEIFKEEALEQAKKAQERINNGEDLPLL-GVPLAIKDNLCYKDHLMTASSKMLEGYKAPYT--APTVQRLIDNGAIIIGRTNMDEFAMGGTTETSNYGVTRNPKNRAHVPGGSSGGSAAAVAANFAFGALGSDTGGSIRQPASFCGIVGVKPTYGRVPRLGCIAMASSLDQVGPLTKDVKDAALMTKIIAGFDPKESTTLNIP 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: QRSL1_XENTR (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Xenopus tropicalis GN=qrsl1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.230e-25
Identity = 77/257 (29.96%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   77 GDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK--------------------ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPL 787
            G I P  + ++ ++ ++E+S     ++ +I   E+  LKQA E+  R+ +G+P+  LDG+ IA+KD    +   TT  ++ L K      +A  V +L   GA+ +GKTN+ E   G+   +  +G  +NP+  S+                    IT               C +A+G D GGS R PA+ CGVVG KPT+G +   G++PL  ++ + GI+   V+DA  V   + G  P    T+  P   F L
Sbjct:   16 GQIKPTELCQKCLSFIKETSF----LNAYITVTEDFALKQAAEADERFIQGKPLGDLDGIPIAIKDNFSTAGIETTCASRML-KGYIAPYNATVVQKLFDQGAVFMGKTNLDEFAMGSGSTDSIFGPVKNPWSYSRSYIDKTSLSHHAAKDDSDWVITGGSSGGSACAVSAGTCYLAIGSDTGGSTRNPASHCGVVGLKPTYGLVSRHGLIPLVNSMDVPGIVTRCVDDAATVLGVLAGHDPYDSTTIQDPFQPFSL 267          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CYAP83.694e-2533.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ANAD23.694e-2536.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBL3.694e-2529.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNE74.825e-2532.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METM74.825e-2535.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAP74.825e-2533.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ANADE4.825e-2538.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIC14.825e-2534.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_BRAHW6.302e-2530.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
QRSL1_XENTR8.230e-2529.96Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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