FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PELLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelodictyon luteolum (strain DSM 273) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.230e-25
Identity = 75/255 (29.41%), Postives = 118/255 (46.27%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            +T   VA  ++  +R      + ++ F    E + L++A    L+   G     L G+ +A+KD I     P T  +K L        DA  V+RL    AI +GKTNM E   G+S  N  +G   NP+D  ++               L  VALG D GGSVR PA  C +VG KPT+GRI   G++    +   +G+LA   +DA +V   + G       + + P  ++    +  S+  +++G  + +FN
Sbjct:   18 VTCEAVARHYLDRIRSHEGDNIYITVF----ENEALQRARSLDLKLAGGGTPGRLFGMPMAIKDNISMKGAPLTCASKMLEGYTSVY-DATAVLRLEAEDAIFLGKTNMDEFAMGSSNENSAFGPVPNPFDNQRVPGGSSGGSAAAVAAGLAMVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLALNCDDAALVLEVMAGVDGKDATSSAHPVPAYAAEMTDVSLKGLRIGVPEEFFN 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcoides burtonii (strain DSM 6242) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.230e-25
Identity = 74/216 (34.26%), Postives = 104/216 (48.15%), Query Frame = 2
Query:  197 ATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            A ++     KGE    L GV IA+KD I      TT  +K L    P   DA  + RL+  GA+++GKTNM E   GTS  +  YGV  NP+D  ++                 P++LG D GGSVR PAA CGVVG KPT+G +   G++    ++  +G +A  VED   V   I G     + + S+ K           +  +K+G  D +F
Sbjct:   45 ALDTAKMVDKGEVAGPLAGVPIAIKDNISTKGLATTCSSKILEGYVP-PYDAHVIERLKEAGAVIIGKTNMDEFAMGTSTESSCYGVTLNPWDHERVPGGSSGGSAAVVAAGEAPISLGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGLISYANSLEQIGPMATCVEDIAAVMDVIGG--YDARDSTSIDKKIDHQAALIDDVKGLKIGVPDEYF 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLONN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium novyi (strain NT) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24
Identity = 75/223 (33.63%), Postives = 110/223 (49.33%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSI 808
            K+  ++  ++E  LK+A     + ++GE +  L GV + +KD I  S    T  +K L   + P   DA  + RL+    I++GK NM E   G+S  N  + + RNP+D  +I                 P++LG + GGSVR PAALCGVVG KPT+GRI   GV+    T+  VG +   V D  ++   I+G     S    V++P     L K  T I
Sbjct:   39 KIGAYLYLSKESALKEAKLLDEKIQRGEKLKGLWGVPVGIKDNISVSGMQNTCASKILENYISPY--DATVISRLKENNGIILGKLNMDEFAMGSSNENSAFKIVRNPWDLERIPGGSSGGSTAAVASREIPLSLGSETGGSVRQPAALCGVVGLKPTYGRISRYGVISFASTLDQVGTIGRDVTDCAILTEVISGFDKRDSTSARVAVPNYKESLKKDLTGI 259          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24
Identity = 72/228 (31.58%), Postives = 110/228 (48.25%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            K+  F++   +  L+QA     +   GE I +L G+ I VKD +     PTT  ++ L    P   ++    +L   GA++VGKTN+ E   G+S  N  Y V  NP+D S++                C VALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G    +VED  ++  AI G  P  S    V +P     L     +   +++G
Sbjct:   35 KLHSFLHITAQQALEQARAVDAKIAAGEEIGLLAGIPIGVKDNMCTKGIPTTCASRILENFVP-PYESTVTQKLLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGKSVEDTAILLKAIAGYDPKDSTSLKVEIPDYVASLKPDLKARGKLRIG 261          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLTR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 78/264 (29.55%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKL 823
            +R + L+   A  + +++   + E F   +        ++  F++  +E  L +A+    +  KG+PI +L G+ I VKD I  +   TT  +K L   V P   D+  V R+ +   IL+GK NM E   G++     +    NP+D  ++                CP+ALG D GGS+R PAA CGVVGFKP++G +   G++    ++  +G L   VED  +   A  G  P    T    K +F     A S+   KL
Sbjct:    2 YRKSALELRDAVVNRELSVTAITEYFYHRIESHDE---QIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPF--DSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDPKDSTTRDFFKGTF---SQALSLEVPKL 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLTB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 78/264 (29.55%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKL 823
            +R + L+   A  + +++   + E F   +        ++  F++  +E  L +A+    +  KG+PI +L G+ I VKD I  +   TT  +K L   V P   D+  V R+ +   IL+GK NM E   G++     +    NP+D  ++                CP+ALG D GGS+R PAA CGVVGFKP++G +   G++    ++  +G L   VED  +   A  G  P    T    K +F     A S+   KL
Sbjct:    2 YRKSALELRDAVVNRELSVTAITEYFYHRIESHDE---QIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPF--DSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDPKDSTTRDFFKGTF---SQALSLEVPKL 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 78/264 (29.55%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKL 823
            +R + L+   A  + +++   + E F   +        ++  F++  +E  L +A+    +  KG+PI +L G+ I VKD I  +   TT  +K L   V P   D+  V R+ +   IL+GK NM E   G++     +    NP+D  ++                CP+ALG D GGS+R PAA CGVVGFKP++G +   G++    ++  +G L   VED  +   A  G  P    T    K +F     A S+   KL
Sbjct:    2 YRKSALELRDAVVNRELSVTAITEYFYHRIESHDE---QIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPF--DSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDPKDSTTRDFFKGTF---SQALSLEVPKL 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLT2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 78/264 (29.55%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKL 823
            +R + L+   A  + +++   + E F   +        ++  F++  +E  L +A+    +  KG+PI +L G+ I VKD I  +   TT  +K L   V P   D+  V R+ +   IL+GK NM E   G++     +    NP+D  ++                CP+ALG D GGS+R PAA CGVVGFKP++G +   G++    ++  +G L   VED  +   A  G  P    T    K +F     A S+   KL
Sbjct:    2 YRKSALELRDAVVNRELSVTAITEYFYHRIESHDE---QIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPF--DSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDPKDSTTRDFFKGTF---SQALSLEVPKL 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THISH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 76/250 (30.40%), Postives = 117/250 (46.80%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            H  T+ + S A + G+ +   + E F+  +         ++ F+    E  L QA  +  R  +GE    L GV +A KD        TT G+K L   + P   DA  V R +  G  ++GKTNM E   G+S     +G  +NP+D +++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +AAT ED  ++   ++G  P    ++  P   F
Sbjct:    2 HEKTIAELSAALTKGECSSVELTEHFLKRIEALDGG---LNSFVTVTAEQALAQAKAADDRRARGEA-GPLTGVPMAQKDIFCTDGVRTTCGSKMLDNFIAPY--DATVVERFKAEGCPMLGKTNMDEFAMGSSNETSFHGPVKNPWDTARVPGGSSGGSAAAVAARLTPSATGTDTGGSIRQPAALCGITGLKPTYGRVSRWGMIAFASSLDQGGPMAATAEDCALLANVMSGFDPRDSTSIERPAEDF 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 77/263 (29.28%), Postives = 124/263 (47.15%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            ++  + +  + G+++   +  + I  + E  N    +  ++  N E     A +       GE +  L GV  A+KD +     PTT  +K L +  P   ++    RL   G IL+GKTN+ E   G+S     +G  +NP+D +++               LC  ALG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  +  V DA  +   I G  P  S    V +PK S  +   + SIS +++G
Sbjct:    2 SIAKWRQKLNKGEVSSLELINQQINRIEEVENT---LHSYLYLNHEKARASAIKIDEARAAGEELPPLAGVPFAIKDNLCTKGIPTTCSSKMLEEFIP-PYESTVTQRLWKAGGILLGKTNLDEFAMGSSTETSAFGPTKNPWDITRVPGGSSGGSAAAVASGLCTAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQVGPFSTNVSDAAEILQVIAGHDPRDSTCLDVPVPKYSDHI---SESISGLRIG 257          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PELLD8.230e-2529.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METBU8.230e-2534.26Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CLONN1.075e-2433.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ANAVT1.075e-2431.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_CHLTR1.404e-2429.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLTB1.404e-2429.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLTA1.404e-2429.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLT21.404e-2429.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_THISH1.833e-2430.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PROMA1.833e-2429.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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