FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PERMH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 74/255 (29.02%), Postives = 118/255 (46.27%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            ++ P  V E F    + + +  +K+  ++ +  E  +++A +   +      I  L G+ IA+KD I      TT  +K L    P   DA  + RL+    ++ GKTN+ E   G+S  N  + V RNP+D  ++               L P ALG D GGS+R PAA CGV+G KPT+GR+   G++    ++  +G    TVED  ++   I+G  P    +       F        I  IK+G  + +F
Sbjct:   19 EVKPSEVIESF---AQRTKDVEVKIKSYVTDLTEQAVERAKQLDEKISDLSEIPELFGIPIAIKDNISTEGIRTTCSSKILENYVP-PFDATVIKRLKDKEYVITGKTNLDEFAMGSSTENSAFFVTRNPWDLDRVPGGSSGGSAAAVSAGLAPAALGSDTGGSIRQPAAFCGVIGLKPTYGRVSRYGLVAFASSLDQIGTFTRTVEDTAILLNIISGKDPKDSTSADREVPDFTKFLD-KDIKGIKIGIPEEFF 268          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PARUW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Protochlamydia amoebophila (strain UWE25) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 71/264 (26.89%), Postives = 128/264 (48.48%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            ++++ ++    +  GD++   + + ++  + +      K+  F++  EE  + QA +   +    +P+  L G+ IA+KD I      +T G+K+L   +     A  +  L   GA+++GKTNM E   G+S  N       NP++                   L P++LG D GGSVR+PA+ CGVVGFKPT+GR+   G++    ++  +G LA    D  ++   I    P    +++L    + L +   SI+ +K+G
Sbjct:    2 YKFSAIEIRDQFIRGDVSASAITQHYLNRIAKYDQ---KIGAFLSVYEEQAMMQAKQLDQKRLANQPLGKLAGIPIAIKDNILVKGEISTCGSKFLTNFKS-PYQASVIEYLLAEGAVIIGKTNMDEFAMGSSTENSALQKTSNPWNLKCTPGGSSGGSAAAVAGRLSPLSLGSDTGGSVRLPASFCGVVGFKPTYGRVSRFGLVAYGSSLDQIGPLATNTADTALLMEVIGRHCPKDSTSIALGPEDY-LSQFKDSIAGMKIG 260          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METVS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 74/206 (35.92%), Postives = 106/206 (51.46%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPIS--VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            FI+ N E +LK+A +     +K E +    L G +IAVK  I+   Y  +  +K L      T DA  + +LR  GA+++G TNM E  +G+SG   +YG  +NP    +I               LC +ALG D GGS+R PA+ CGVVGFKPT+G +   G+  L  +   +G L  T ED+L +   I G   S   ++  PK
Sbjct:   21 FIDLNGERVLKEAKD----LEKNEKLKNKSLYGKIIAVKSNINVEGYKISCASKTLDNYTG-TYDATVIKKLRSEGALIIGMTNMDEFASGSSGETSYYGPTKNPKALDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPTYGVVSRQGLCDLAMSFDQIGPLTKTAEDSLNLTNVIKGLDLSNTTSLKTPK 221          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THEFY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermobifida fusca (strain YX) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 74/254 (29.13%), Postives = 119/254 (46.85%), Query Frame = 2
Query:   65 AYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            A +SG+ +     + ++  + E      ++  F++   +  L+QA     R   GE +  L GV +A KD       PTT  +K L   +    DA    RLR  G +++GKTN+ E   G+S  N  YG  RNP+D  ++                 P+A G D GGS+R PAA+CG+VG KPT+G     G++    ++   G +A  V DA +++ A +G  P    +V+ P            +S +++G
Sbjct:   15 AIASGETSAVEATQAYLDRIAEVDG---QIHAFLHVAADKALEQARAVDARRAAGEKLGPLAGVPVAHKDVFTTKDMPTTAASKILEGWQS-PYDATVTERLRDAGLVILGKTNLDEFAMGSSTENSAYGPTRNPWDTDRVPGGSSGGSSAAVAAFEAPLATGTDTGGSIRQPAAVCGLVGAKPTYGTSSRYGLIAFASSLDTPGPIARNVLDAALLHEAFSGHDPRDSTSVNEPVPPVVEAARRADVSGMRIG 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOSW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus sp. (strain WCH70) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 73/206 (35.44%), Postives = 102/206 (49.51%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRY-KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            F+  NEE+   +A E   +  K+G    VL G+ I +KD I      TT  +K L+   P   DA  + RL   GAI +GK NM E   G+S  N  + + RNP+D  ++                 P ALG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +   I G  P+ S    V +P
Sbjct:   43 FLTLNEENARAKAKELDDKLAKEGNDFGVLFGMPIGIKDNIVTKGLRTTCASKILYNFDPIY-DATVMERLNEAGAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITRTVEDNAYLLQVIAGLDPMDSTSANVEVP 247          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 72/212 (33.96%), Postives = 106/212 (50.00%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFP 784
            K+  F++   +  L+QA     +   GE I +L G+ I VKD +     PTT  ++ L    P   ++    +L   GA++VGKTN+ E   G+S  N  Y V  NP+D S++                C VALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G    +VED  ++  AI G     Q + SL KV  P
Sbjct:   35 KLHSFLHITAQQALEQARAVDAKIAAGEEIGLLAGIPIGVKDNMCTKGIPTTCASRILENFVP-PYESTVTQKLLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGKSVEDTAILLKAIAG--YDHQDSTSL-KVEIP 242          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophus aciditrophicus (strain SB) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 69/191 (36.13%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +I    E  L++A ++  + + GE I+ L G+ +A+KD        TT G+  L    P   DA  V++LR  GA+  GKTNM E   G+S    +YG  RNP+D  +I                C  ALG D GGS+R PAALCGVVG KPT+GR+   G++    ++  +G     VED  ++   I G
Sbjct:   43 YITLMRESALEEAQKADEQIRTGE-INALTGIPVALKDIYCTRGVRTTCGSLILDNFIP-PYDATVVVKLREAGAVFTGKTNMDEFAMGSSTETSYYGFTRNPWDLERIPGGSSGGSAAAVAADECIAALGSDTGGSIRQPAALCGVVGMKPTYGRVSRFGLIAFASSLDQIGPFTKDVEDCAILLNVIAG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOTE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium tetani GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 65/195 (33.33%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            K+  F+    E+ +K+A E   +  KGE +  L G+ +++KD I       T  +K L   +    DA  + +++    I++GK NM E   G+S  N  Y   RNP+D  ++                 P+ALG D GGSVR PAA CG+VG KPT+GR    G +    T+  VG+L+  VED  ++   I G
Sbjct:   39 KVGAFLYTGSEEAIKKAKELDNKISKGESLKALGGIPVSIKDNISVKGMQNTCASKMLEGYKS-PYDAHVIEKIKNEDGIILGKVNMDEFAMGSSTENSAYKKTRNPWDLDRVPGGSSGGSAAAVAAMETPLALGTDTGGSVRQPAAFCGLVGLKPTYGRTSRYGAIAFGSTLDQVGMLSKDVEDCALLTKNIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S+ ++    + + F+  +    N   K+  ++  +EE+ +K+A E  ++ +K E +  L G+ + +KD I+      T  +K L        DA    +++    I++GK NM E   G+S  N  + +A+NP+D  ++                  ++LG D GGSVR PA+ CGVVG KPT+GRI  SGV+    T+  VG +   VED  ++ +AI G
Sbjct:   16 SNKEVKAEEITKAFLDRINLVDN---KLGAYLYVSEEEAIKKAKEIDVKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILEGYTS-PYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSAIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 68/200 (34.00%), Postives = 99/200 (49.50%), Query Frame = 2
Query:  137 NPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            N   K++ F+   EE+ L  A     +  KGE I +L G  + +KD I       T  +K L   + P   DA     ++  G +++GK NM E   G+S  N  Y + RNP+D  ++                 P+ALG D GGSVR PA+ CG+VG KPT+GR+  SGV+    T+  VG L   V+D  ++   I+G
Sbjct:   35 NIDAKVNAFLYIAEEEALNDAKALDEKLSKGEDIGLLGGAPLGIKDNISVKNMQNTCASKILEGYISPY--DATVSESVKSQGGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTGGSVRQPASFCGIVGLKPTYGRVSRSGVVAYGSTLDQVGTLGRDVKDCALLTQVISG 232          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PERMH1.833e-2429.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PARUW1.833e-2426.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METVS1.833e-2435.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_THEFY2.395e-2429.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_GEOSW2.395e-2435.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_ANASP2.395e-2433.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNAS3.127e-2436.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_CLOTE3.127e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBL3.127e-2430.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBA3.127e-2434.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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