FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13805 contig Ccv1_Contig13805:89..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.865e-51
Identity = 95/206 (46.12%), Postives = 141/206 (68.45%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEKVKP 826
            + S  Q+P+      E D   +LL++RIVFLG+ +DD  AD +ISQLLLLDA+D  +DI LF+NSPGGS++A M IYD ++  +ADVSTV LG++AS  + +L  G+KGKR+ MPN+++MIHQP+G A G+  ++ I+ RE+M++K    +I S  TG+   +++ D DRD +++P EA EYG+ID VID      + P+ +   P
Sbjct:   68 IDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIESDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAPIGDGTPP 273          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNY3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.865e-51
Identity = 98/184 (53.26%), Postives = 137/184 (74.46%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI-IPLVPV 808
            D    LL+ERI+FLG  +DD VAD+I++QLL LDA+DP KDI+L++NSPGGS+ A +AIYD +Q +R DV T+  G++AS  + +L GG KGKR A+P++RIMIHQP+GGA GQ +++EIQAREI++ KD    ++   TG+  E++Q+D +RD +MS  EA EYG+ID VI R ++  P  PV
Sbjct:   39 DIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPDPTTPV 222          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.048e-51
Identity = 95/172 (55.23%), Postives = 131/172 (76.16%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLK+RIVFLG+ IDD+VA+ +I+QLL L+A+DP KD+ L++NSPGGS++A +AIYD +Q ++ DVST+ +G +AS A+++L  G KGKR+A+PN RIMIHQP+GGA G   DVEI  RE++  KD   RI+S  TG+  E+++KD DRD +MS  EA EYGI+D V+
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.048e-51
Identity = 95/172 (55.23%), Postives = 131/172 (76.16%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLK+RIVFLG+ IDD+VA+ +I+QLL L+A+DP KD+ L++NSPGGS++A +AIYD +Q ++ DVST+ +G +AS A+++L  G KGKR+A+PN RIMIHQP+GGA G   DVEI  RE++  KD   RI+S  TG+  E+++KD DRD +MS  EA EYGI+D V+
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.048e-51
Identity = 95/172 (55.23%), Postives = 131/172 (76.16%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLK+RIVFLG+ IDD+VA+ +I+QLL L+A+DP KD+ L++NSPGGS++A +AIYD +Q ++ DVST+ +G +AS A+++L  G KGKR+A+PN RIMIHQP+GGA G   DVEI  RE++  KD   RI+S  TG+  E+++KD DRD +MS  EA EYGI+D V+
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.125e-50
Identity = 95/172 (55.23%), Postives = 129/172 (75.00%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLK+RI+FLG+ IDD VA+ +I+QLL L+A+DP KDI L++NSPGGS++A MAIYD +Q +R DVST+ +G++AS  + +L  G KGKR+A+PN  IMIHQP GG  GQ  D+EI AR IM+ K++  +I++  TG+  E++QKD DRD +M+  EA EYGIID VI
Sbjct:   20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVI 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_THEEB (ATP-dependent Clp protease proteolytic subunit 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.469e-50
Identity = 105/225 (46.67%), Postives = 149/225 (66.22%), Query Frame = 2
Query:  188 QRQHDVPLSSAPQTPATAM----------------RGAEA-DAMGLLLKERIVFLGNN------IDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSII 793
            Q ++D PLS+  ++PA  +                RG  A D    LL+ERI+FLG        IDD VAD+I++QLL LDA+DP KDI L++NSPGGS++A MAIYD ++ +R DV T+  G++AS  + +L GGT GKR A+PN RIMIHQP+GGA GQ +D+EIQAREI+++K     ++S  TG+  E+++ D +RD +MS  EA  YG+ID V+ R +++
Sbjct:    3 QSRYDHPLSAILRSPALNLPPTHANIVPMVVEQSGRGERAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMAIYDTMKHIRPDVCTLCFGLAASMGAFLLSGGTPGKRMALPNARIMIHQPLGGAQGQAVDIEIQAREILYHKRKLNELLSQHTGQPIERIEADTERDFFMSAEEAKAYGLIDQVVTRQTLL 227          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_GEOKA (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus kaustophilus GN=clpP PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.918e-50
Identity = 97/180 (53.89%), Postives = 134/180 (74.44%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            RG  A D    LLK+RIVFLG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++A +AIYD +Q ++ DVST+ +GM+AS  + +L  G KGKRFA+PN+ IMIHQP+GGA GQ  ++EI A+ I+  +D   RI+S  TG+  E +++D DRD +M+  +A+EYGIID V+ R
Sbjct:   13 RGERAYDIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIIDRVLTR 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.505e-50
Identity = 91/174 (52.30%), Postives = 131/174 (75.29%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            D    LLK+RI+F+G  I+D +A+++I+Q+L L+++DP KDI L++NSPGG + A +AIYD +Q +R+DVST+ +GM+AS  +++L  G +GKRF +PN+RIM+HQPMGGA GQ  DVEI AREIM  K+   +I++  TG+  EQ+ KD DRD +MS  EA +YG+ID V+ R
Sbjct:   19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLKR 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMP (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.505e-50
Identity = 96/199 (48.24%), Postives = 141/199 (70.85%), Query Frame = 2
Query:  191 RQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRD 784
            R  D   S+ P     + RG  A D    LL+ERI+FLG  I+D V+D++++QLL L+A+DP KDI++++NSPGGS++A +AIYD +Q +  DV T+  G++AS  + +L GG KGKR A+PN+RIMIHQP+GGA GQ +++EIQA+EI+  K     +++  T +S E++ +D +RD ++SP EAVEYG+ID VI  D
Sbjct:   16 RDIDKSRSAVPTVVEQSGRGERAFDIYSRLLRERIIFLGTGINDQVSDSLVAQLLFLEAEDPHKDIQIYINSPGGSVTAGLAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAKHTNQSLEKINEDTERDYFLSPEEAVEYGLIDKVIKND 214          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_ARATH3.865e-5146.12ATP-dependent Clp protease proteolytic subunit 3, ... [more]
CLPP2_SYNY33.865e-5153.26ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THESQ5.048e-5155.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP15.048e-5155.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA5.048e-5155.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNWW1.125e-5055.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_THEEB1.469e-5046.67ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_GEOKA1.918e-5053.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ2.505e-5052.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMP2.505e-5048.24ATP-dependent Clp protease proteolytic subunit 3 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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