FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALSV (ATP-dependent Clp protease proteolytic subunit OS=Salmonella schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALNS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella newport (strain SL254) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALHS (ATP-dependent Clp protease proteolytic subunit OS=Salmonella heidelberg (strain SL476) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALEP (ATP-dependent Clp protease proteolytic subunit OS=Salmonella enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALCH (ATP-dependent Clp protease proteolytic subunit OS=Salmonella choleraesuis GN=clpP PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BACP2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus pumilus (strain SAFR-032) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 87/182 (47.80%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 787
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L+A+DP KDI +++NSPGGS++A MAIYD +Q ++  VST+ +GM+AS  + +L  G KGKR+A+PN+ +MIHQP+GGA GQ  ++EI A+ I+  +D   ++++  TG+  E +++D DRD + +  EA++YG+ID V+ R++
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNT 194          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SACD2 (ATP-dependent Clp protease proteolytic subunit OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 85/182 (46.70%), Postives = 129/182 (70.88%), Query Frame = 2
Query:  236 TAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            TA      D    LLKER++FL   ++D +A+ +++Q+L L+A++P KDI L++NSPGGS++A ++IYD +Q ++ DVST+ +G + S  + +L  G KGKRF +PN R MIHQP GGA GQ  D+ IQA+EI+  ++    I++G TGR  E++ +D +RDR+MS  E+VEYG+ID V++R
Sbjct:   26 TARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQACSMGAFLLTAGAKGKRFCLPNARTMIHQPSGGAQGQASDIHIQAQEILKLRERLNEIMAGHTGRGVEEIARDTERDRFMSAHESVEYGLIDKVLER 207          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DEHE1 (ATP-dependent Clp protease proteolytic subunit OS=Dehalococcoides ethenogenes (strain 195) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 94/193 (48.70%), Postives = 135/193 (69.95%), Query Frame = 2
Query:  206 PLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P +  P    ++ RG  A D   LLLKERI+FLG+ I+D VA+ +I+QLL LD +DP KDI L+++SPGG +SA +A+YD +QL+R  VST+ +G++AS A+++L  G KGKR+A+PN  I +HQ MGGA GQ  D+EI AREIM  +D    I+   TG+  E++  D DRD Y++  +AVEYG+ID ++ +
Sbjct:    4 PENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQPMEKIIHDSDRDYYLNAQQAVEYGLIDEILQK 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTH (ATP-dependent Clp protease proteolytic subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 91/192 (47.40%), Postives = 134/192 (69.79%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            +S  P       RG  + D    LLK+RI+ L + I+D  A  +++Q+L L+A+DP KDI+L++NSPGGS++A  AIYD +Q V+ DVST+ +GM+AS  + +L  G KGKRFA+PN+ IMIHQP+GGA GQ  D++I A +I+  K+   RI+S  TG+ FE++++D +RD +MS  EA  YGI+D V++R
Sbjct:    1 MSLVPIVVEQTNRGERSYDIYSRLLKDRIIVLSDEINDVTASLVVAQMLFLEAEDPDKDIQLYINSPGGSVTAGFAIYDTMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIKIHAEQIIKIKNKLNRILSERTGQPFEKIERDTERDFFMSAEEAKAYGIVDEVMER 192          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SALTI2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALSV2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALNS2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALHS2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALEP2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALCH2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACP22.593e-4747.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACD23.386e-4746.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DEHE13.386e-4748.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOTH3.386e-4747.40ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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