FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOUT (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain UTI89 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLI (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain K12) GN=clpP PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOLC (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL6 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6 GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOL5 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOK1 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O1:K1 / APEC GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECOHS (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O9:H4 (strain HS) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECO57 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O157:H7 GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ECO24 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2 
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
[Close]
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 87/185 (47.03%), Postives = 135/185 (72.97%), Query Frame = 2 
Query:  224 QTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            QTP    RG  + D    LLKERI+FLG+ ++D VA+ I++QLL L+A+DP KDI  ++NSPGGS++A MAIYD +Q ++ D++T+ +G +AS  +++L  GT GKR+A+PN+RIMIHQP+GG  GQ  D+EI  +EI+  + +   I++  TG++ ++++ D +RD +MS +EA +YG+ID V+
Sbjct:   10 QTP----RGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMIHQPLGGFQGQATDIEIHTKEILRIRKDLNNILAHHTGKTLKKIESDTERDNFMSSVEAQKYGLIDEVL 190
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ECOUT4.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLI4.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOLC4.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL64.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOL54.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOK14.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECOHS4.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO574.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO244.422e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESPS4.422e-4747.03ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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