FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 94/203 (46.31%), Postives = 139/203 (68.47%), Query Frame = 2
Query:  212 SSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEK 817
            S  P    T+ RG  A D    LL+ERI+FLG  ID+ VA  I++QL+ L+++DP +DI +++NSPGGS+SA + IYD +Q +R ++STV +GM+AS  + +L  G KGKR ++P++RIMIHQP GGA GQ  D+ IQAREI   +     +++  TG+  E+V++D +RDR+M+P EA+EYG+ID + ++       P PEK
Sbjct:   27 SLVPMVIETSGRGERAFDIFSRLLRERIIFLGTGIDEHVAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALEYGLIDAIFEKR------PTPEK 223          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSE (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain EbN1) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.422e-47
Identity = 90/192 (46.88%), Postives = 131/192 (68.23%), Query Frame = 2
Query:  203 VPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            V L   P     + RG  A D    LLKER++FL   ++D  A+ I++QLL L++++P KD+  ++NSPGGS+S+ MAIYD +Q ++  VST+ +G +AS  S +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  +     +++  TG+  EQ++KD DRDR+MS  +AVEYGI+D V+
Sbjct:   15 VGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYFYINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADAVEYGIVDKVL 206          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_PROVI (ATP-dependent Clp protease proteolytic subunit OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 99/203 (48.77%), Postives = 138/203 (67.98%), Query Frame = 2
Query:  212 SSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEK 817
            S  P    T+ RG  A D    LL+ERI+FLG+ ID+ VA  I++QL+ L+++DP +DI ++VNSPGGS+SA + IYD +Q +R DVSTV +GM+AS  + +L  G KGKR ++P++RIMIHQP GGA GQ  D+ IQAREI   +     I++  TG+  +QV++D +RDR+M   EA+EYGIID V ++       P PEK
Sbjct:   27 SLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPDRDIFIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEIMAKHTGKDVQQVREDSERDRWMDAGEALEYGIIDQVFEKR------PAPEK 223          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DECAR (ATP-dependent Clp protease proteolytic subunit OS=Dechloromonas aromatica (strain RCB) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 88/192 (45.83%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            L   P     + RG  A D    LLKER++FL   ++D  A+ +++QLL L+A++P KDI  ++NSPGGS++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRFA+PN+R+MIHQP+GG  GQ  D+ I A+EI+  +D   RI++  +G+  E+++KD DRD ++S  EA EYG+ID V+ R
Sbjct:   14 LGLVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLVVAQLLFLEAENPDKDIYFYINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEAAEYGLIDKVLTR 205          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP7 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 86/177 (48.59%), Postives = 128/177 (72.32%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            D    LLKERI+FL   ++D +A+ I++Q+L L+A+DP KDI L++NSPGG ++A +AIYD +  ++ DV+T+  G + S  + +L GG KGKRFA+PN R+MIHQP+GGA GQ  D++IQA+EI+  K+  TR ++  +G+ FE+V  D +RD +MS +EA+EYG+ID V+    I
Sbjct:   19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVLTHRDI 195          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP5_ARATH (ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 92/190 (48.42%), Postives = 134/190 (70.53%), Query Frame = 2
Query:  206 PLSSAPQTPATAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P  +  Q P   ++      +  L + RI+  G  +DD +A+ I++QLL LDA DPTKDI ++VNSPGGS++A MAI+D ++ +R DVSTV +G++AS  + +L  GTKGKR+++PN+RIMIHQP+GGA G   D++IQA E++H+K N    ++  TG+S E++ +D DRD +MS  EA EYG+IDGVI
Sbjct:   96 PAYAQGQGPPPMVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_BACSK (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 87/179 (48.60%), Postives = 131/179 (73.18%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            RG  A D    LLK+RI+ LG+ +DD VA++I++Q+L L A+DP KDI L++NSPGGS++A MAIYD +Q ++ DVST+ +GM+AS  + +L  G KGKR A+PN+ +MIHQP+GG  GQ  D+EI AR I+  ++   +I++  +G+ +E++ +D DRD +M+  +A EYG+ID VI+
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSGVDDNVANSIVAQMLFLQAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLTAGAKGKRMALPNSEVMIHQPLGGMQGQAADMEIHARRIIQMREKLNQIMAERSGQPYERIARDTDRDNFMTAEQAKEYGLIDKVIE 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_BACHK (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus thuringiensis subsp. konkukian GN=clpP2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 87/177 (49.15%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L++QDP KDI +++NSPGGS++A MAIYD +Q ++  VST+ +GM+AS  + +L  G KGKR+A+PN+ +MIHQP+GGA GQ  ++EI A+ I+  ++   +I++  TG+  E +Q+D DRD +M+  +A+EYG+ID +
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKI 189          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_BACCZ (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus cereus (strain ZK / E33L) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 87/177 (49.15%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L++QDP KDI +++NSPGGS++A MAIYD +Q ++  VST+ +GM+AS  + +L  G KGKR+A+PN+ +MIHQP+GGA GQ  ++EI A+ I+  ++   +I++  TG+  E +Q+D DRD +M+  +A+EYG+ID +
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKI 189          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_BACCR (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 87/177 (49.15%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L++QDP KDI +++NSPGGS++A MAIYD +Q ++  VST+ +GM+AS  + +L  G KGKR+A+PN+ +MIHQP+GGA GQ  ++EI A+ I+  ++   +I++  TG+  E +Q+D DRD +M+  +A+EYG+ID +
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQPLEVLQRDTDRDNFMTAEKALEYGLIDKI 189          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CHLCH4.422e-4746.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOSE4.422e-4746.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PROVI5.776e-4748.77ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DECAR5.776e-4745.83ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP75.776e-4748.59ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP5_ARATH5.776e-4748.42ATP-dependent Clp protease proteolytic subunit 5, ... [more]
CLPP2_BACSK5.776e-4748.60ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACHK5.776e-4749.15ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACCZ5.776e-4749.15ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACCR5.776e-4749.15ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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