FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALPK (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 84/190 (44.21%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A ++IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALPA (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 84/190 (44.21%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A ++IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_PELLD (ATP-dependent Clp protease proteolytic subunit OS=Pelodictyon luteolum (strain DSM 273) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 98/203 (48.28%), Postives = 138/203 (67.98%), Query Frame = 2
Query:  212 SSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEK 817
            S  P    T+ RG  A D    LL+ERI+FLG+ ID+ VA  I++QL+ L+++DP +DI ++VNSPGGS+SA + IYD +Q +R DVSTV +GM+AS  + +L  G KGKR ++P++RIMIHQP GGA GQ  D+ IQAREI   +     I++  TG+  +QV++D +RDR+M+  EA++YGIID V  +       P PEK
Sbjct:   27 SLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAEEALDYGIIDQVFAKR------PAPEK 223          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LACSS (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 88/178 (49.44%), Postives = 132/178 (74.16%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            RG  A D    LLK+RI+ L   ++D +A+ II+QLL LDAQD  KDI +++NSPGGS++A +AI D +  +++DV T+A+GM+AS AS++L  GTKGKRFA+PN+ ++IHQP+GGA GQ  ++EI AREI+  +    +I++  +G++FE++Q D DRD YM+  EA +YG+ID ++
Sbjct:   12 RGERAYDIYSRLLKDRIIMLSGEVNDQMANTIIAQLLFLDAQDSDKDISIYINSPGGSVTAGLAIMDTMNFIKSDVQTIAMGMAASMASVLLSAGTKGKRFALPNSTVLIHQPLGGAQGQQTEIEIAAREILKTRKRLNQILADNSGQTFEKLQADTDRDNYMTAQEAKDYGLIDDIM 189          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 88/177 (49.72%), Postives = 127/177 (71.75%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            D    LLK+RI+FLG  IDD VA+ +I+QLL L+A+DP KDI L++NSPGG ++A MAIYD ++ ++A VST+ +G +AS  + +L GG KGKR+++ N+RIMIHQP+GG  GQ  D+ I A+EI+  KD    +++  TG+S E+V  D +RD +MS  EA  YGIID ++ R+ +
Sbjct:   18 DIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIVTRNVV 194          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 88/177 (49.72%), Postives = 127/177 (71.75%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            D    LLK+RI+FLG  IDD VA+ +I+QLL L+A+DP KDI L++NSPGG ++A MAIYD ++ ++A VST+ +G +AS  + +L GG KGKR+++ N+RIMIHQP+GG  GQ  D+ I A+EI+  KD    +++  TG+S E+V  D +RD +MS  EA  YGIID ++ R+ +
Sbjct:   18 DIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIVTRNVV 194          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ACTPJ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 85/172 (49.42%), Postives = 127/172 (73.84%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLKERI+FL   ++D +A+ I++Q+L L+A+DP KDI L++NSPGG ++A +AIYD +  ++ DV+T+  G + S  + +L GG KGKRFA+PN R+MIHQP+GGA GQ  D++IQA+EI+  K+  TR ++  +G+ FE+V  D +RD +MS +EA+EYG+ID V+
Sbjct:   19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP2 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.543e-47
Identity = 85/172 (49.42%), Postives = 127/172 (73.84%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLKERI+FL   ++D +A+ I++Q+L L+A+DP KDI L++NSPGG ++A +AIYD +  ++ DV+T+  G + S  + +L GG KGKRFA+PN R+MIHQP+GGA GQ  D++IQA+EI+  K+  TR ++  +G+ FE+V  D +RD +MS +EA+EYG+ID V+
Sbjct:   19 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_PELPD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter propionicus (strain DSM 2379) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.852e-47
Identity = 92/188 (48.94%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P     + RG  A D    LLKERI+FLG  IDD VA+ II+QLL L+A+DP KDI L++NSPGG +++ MAIYD ++ ++A VST+ +G +AS  +++L  G KGKRF++ ++RIMIHQP+GG  GQ  D+ I A+EI+  K+    I++  TG+S E+++ D DRD +MS  EA EYG+ID    R
Sbjct:    4 PMVVEQSGRGERAYDIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPGGVVTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIHQPLGGFQGQATDISIHAKEILRMKEELNSILADLTGQSKERIEADTDRDYFMSATEAEEYGLIDATFTR 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.852e-47
Identity = 96/193 (49.74%), Postives = 133/193 (68.91%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRD 784
            +S  P       RG  + D    LLK+RI+FLGN I+D  A+ I +QLL L+A++P +DI L++NSPGG +S+ +AIYD +Q ++ DV T+ LG ++S A+L+L GG  GKR A+PN RIM+HQPMGGA+GQ  D+EIQARE++  K+    I    TG++ EQ+QKD +R+ YM+  EA  YGIID VI  D
Sbjct:    1 MSVIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPGGYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNARIMMHQPMGGATGQASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKNYGIIDTVIQID 193          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SALPK7.543e-4744.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALPA7.543e-4744.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELLD7.543e-4748.28ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACSS7.543e-4749.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSM7.543e-4749.72ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOBB7.543e-4749.72ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTPJ7.543e-4749.42ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP27.543e-4749.42ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELPD9.852e-4748.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPIN9.852e-4749.74ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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