FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.889e-46
Identity = 86/176 (48.86%), Postives = 127/176 (72.16%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 787
            D    L +ERI+FLG  +DD +A+ I++ +L LD++DP KDI L++NSPGGS++A MAIYD +Q +++DV T+ +G++AS  S +L  GTKGKR A+P++RIMIHQP GG  GQ  D+EI+AREI+  +     + +  TG+  E++++D+DRD +MS  EA  YG+ID VI+  S
Sbjct:   22 DIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRVIEERS 197          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_DESHY (ATP-dependent Clp protease proteolytic subunit 2 OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.889e-46
Identity = 87/177 (49.15%), Postives = 129/177 (72.88%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPM---GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            D    LLK+RI+FLG  + D VA+ +++Q+L L+A+DP KDI L++NSPGGS+SA MAIYD +Q +RADV T+ +G++AS  + +L  G KGKR A+PN  I+IHQP+   GG SGQ  ++EI A+ ++  K+   RI++  TG++ E+++ D DRDRYM+  EA EYG+ID V+++
Sbjct:   20 DIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGSISAGMAIYDTMQYIRADVHTICVGLAASMGAFLLTAGAKGKRQALPNAEILIHQPLIGGGGISGQATEIEIHAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAEEAKEYGLIDEVLEK 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_GEOLS (ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 92/188 (48.94%), Postives = 130/188 (69.15%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P     + RG  A D    LLKERIVFLG  I+D VAD +I+QLL L+A+DP KDI L++NSPGG ++A MAI+D +  ++A VST+ +G +AS  +++L  G KGKRFA+P+ RIMIHQP GG+ GQ  D+ IQA EI+  K    R+++  +G+  E++++D +RD +MS  EA  YG+ID V+ R
Sbjct:    4 PMVVEQSGRGERAYDIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPGGVVTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQPSGGSRGQATDIMIQAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARNYGLIDAVMTR 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATW (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATT (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATO (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATN (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. novicida (strain U112) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATM (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATH (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain LVS) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_FRATF (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=clpP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 86/179 (48.04%), Postives = 128/179 (71.51%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID-RDSII 793
            D    LLKERIVFL   ++D  A+ +I+QLL L+++DP KDI  ++NSPGG ++A M +YD +Q ++ DVST+ +G++AS  SL+L GG KGKR+++P+++IMIHQP+GG  GQ  D+EI A+ I+  KD   ++++  TG+  E + KD DRD +M   EA  YG+ID VI+ R++II
Sbjct:   22 DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAII 200          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_THEEB4.889e-4648.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_DESHY4.889e-4649.15ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_GEOLS6.386e-4648.94ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATW6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATT6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATO6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATN6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATM6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATH6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATF6.386e-4648.04ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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