FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP4_PROM9 (ATP-dependent Clp protease proteolytic subunit 4 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP4 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.581e-50
Identity = 93/192 (48.44%), Postives = 140/192 (72.92%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            + + P     + RG  A D    LL+ERI+FLG+ I+D V+D++++QLL L+A+DP KDI++++NSPGGS++A MAIYD +Q +  DV T+  G++AS  + +L GG KGKR A+PN+RIMIHQP+GGA GQ +++EIQA+EI+  K     +++  TG+  E++ +D +RD ++SP EAVEYG+ID VI +
Sbjct:   28 IGAVPTVIEQSGRGERAFDIYSRLLRERIIFLGSGINDQVSDSLVAQLLFLEAEDPEKDIQIYINSPGGSVTAGMAIYDTMQQISPDVVTICFGVAASMGAFLLSGGAKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKKTLNSLLAEHTGQPLEKINEDTERDYFLSPSEAVEYGLIDKVIKK 219          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_ANAVT (ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 9.520e-50
Identity = 93/177 (52.54%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            D    LL+ERI+FLG  IDD VA+ I++QLL LDA+D  KDI+L++NSPGGS+ A MAIYD +Q +R DV T+  G++AS  + +L  GTKGKR ++P++RIMIHQP+GGA GQ +D+EIQAREI++ K    ++++  TG+  E+++ D DRD +MS  EA  YG+ID VI R ++
Sbjct:   27 DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNL 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_ANASP (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.520e-50
Identity = 93/177 (52.54%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            D    LL+ERI+FLG  IDD VA+ I++QLL LDA+D  KDI+L++NSPGGS+ A MAIYD +Q +R DV T+  G++AS  + +L  GTKGKR ++P++RIMIHQP+GGA GQ +D+EIQAREI++ K    ++++  TG+  E+++ D DRD +MS  EA  YG+ID VI R ++
Sbjct:   45 DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREILYIKAQLNQLLANHTGQPLERIEADTDRDFFMSAEEAKNYGLIDQVISRQNL 221          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.624e-49
Identity = 94/180 (52.22%), Postives = 133/180 (73.89%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            RG  A D    LLK+RI+FLG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++A +AIYD +Q ++ DVST+ +GM+AS  + +L  G KGKRFA+PN+ +MIHQP+GGA GQ  ++EI A+ I+  +D   RI++  TG+  E +++D DRD +M+  +A EYGIID V+ R
Sbjct:   13 RGERAYDIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRVLTR 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 95/187 (50.80%), Postives = 131/187 (70.05%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   RI+S  TG+S E++Q+D DRD +++  EA EYG+ID V++
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVME 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAEQ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 95/187 (50.80%), Postives = 131/187 (70.05%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   RI+S  TG+S E++Q+D DRD +++  EA EYG+ID V++
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEAKEYGLIDEVME 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 96/186 (51.61%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   RI+S  TG+S E++QKD DRD +++  EA EYG+ID V+
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 96/186 (51.61%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   RI+S  TG+S E++QKD DRD +++  EA EYG+ID V+
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 96/186 (51.61%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   RI+S  TG+S E++QKD DRD +++  EA EYG+ID V+
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAAR (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MRSA252) GN=clpP PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.121e-49
Identity = 96/186 (51.61%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   RI+S  TG+S E++QKD DRD +++  EA EYG+ID V+
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP4_PROM95.581e-5048.44ATP-dependent Clp protease proteolytic subunit 4 O... [more]
CLPP3_ANAVT9.520e-5052.54ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_ANASP9.520e-5052.54ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_GEOTN1.624e-4952.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAES2.121e-4950.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAEQ2.121e-4950.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW2.121e-4951.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAT2.121e-4951.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS2.121e-4951.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAR2.121e-4951.61ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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