FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DESOH (ATP-dependent Clp protease proteolytic subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=clpP PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.770e-49
Identity = 98/200 (49.00%), Postives = 137/200 (68.50%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEK 817
            P       RG  A D    LLK+RIVF+G+ IDD  A+ +I+QLL L+++DP KDI  ++NSPGG +SA MAIYD +Q +++D++TV +G +AS  + +L  G KGKRF++PN+RIMIHQPMGGA GQ  D+ IQA+EI+  KD   +I++  TG+  EQ+Q D DRD +MS  EA  YGI+D VI   S +  +  P++
Sbjct:    5 PMVIEQTSRGERAFDIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDINFYINSPGGKVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAKAYGIVDHVITDRSDLDKLEKPQE 204          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.618e-49
Identity = 91/173 (52.60%), Postives = 133/173 (76.88%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            D    LLK+RIVFLG  IDD VA+ +++QLL L+A+DP KDI+L++NSPGGS++A +AIYD +Q +++DV T+ +G +AS A+++L  GTKGKRFA+PN RIM+HQP+GGA G V DVEI  +E++  K+    I+S  TG+  ++++KD DRD +MS  EA++YG++D VI+
Sbjct:   23 DIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPGGSVTAGLAIYDTMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIMLHQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALDYGLVDKVIE 195          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ANOFW (ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.618e-49
Identity = 94/180 (52.22%), Postives = 131/180 (72.78%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++A MAIYD +Q ++ DVST+ +GM+AS  + +L  G KGKRFA+PN+ IMIHQP+GG  GQ  ++EI A+ I+  +D   RI+S  TG+  E +++D DRD +M+  +A EYG+ID V+ R
Sbjct:   13 RGERAYDIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKAKEYGLIDRVLTR 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.618e-49
Identity = 91/188 (48.40%), Postives = 137/188 (72.87%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P     + RG  A D    LL++RI+FLG  +DD +A+ I++Q+L L+++DP KDI L++NSPGGS+ A MAIYD +Q ++ DVST+ +G++AS  + +L GGTKGKR A+P+ RIMIHQP+GGA G   D+EIQA+EI+  K++   +++  TG+  E++++D DRD +M+P +A EYG+ID VI +
Sbjct:    3 PTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVISK 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ALHEH (ATP-dependent Clp protease proteolytic subunit OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.725e-49
Identity = 92/192 (47.92%), Postives = 138/192 (71.88%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI-DRDSI 790
            P     + RG  A D    LLKER++FL   ++D +A+ I++QLL L++++P KDI +++NSPGG+++A +AIYD +Q ++ DVSTV +G +AS  +L+L GGTKGKR+A+PN+R+MIHQP+GG  GQ  DV+I AREI+  +D   RI++  TG+  E + +D DRD +MSP  A EYG++D V+ DR ++
Sbjct:   20 PMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHIYINSPGGAVTAGLAIYDTMQFIKPDVSTVCIGQAASMGALLLTGGTKGKRYALPNSRMMIHQPLGGFQGQATDVDIHAREILDMRDRLNRIMAHHTGQDMETIARDTDRDNFMSPDTACEYGLVDAVLADRKAL 211          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RALEJ (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia eutropha (strain JMP134) GN=clpP PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.171e-49
Identity = 99/207 (47.83%), Postives = 139/207 (67.15%), Query Frame = 2
Query:  170 LALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 787
            LA  Q        L   P     + RG  A D    LLKER+VFL   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA +AIYD +Q V+ DV T+ +GM+AS  + +L  G KGKR A+PN+RIMIHQP+GGA GQ  D+EIQAREI++ ++    I+S  TG+  E++ +D DRD +MS  +AV+YG+ID VI R S
Sbjct:   10 LATTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVIARRS 216          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LISMO (ATP-dependent Clp protease proteolytic subunit OS=Listeria monocytogenes GN=clpP PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 96/178 (53.93%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL LDAQDP KDI L++NSPGGS+SA MAIYD +  V+ADV T+ +GM+AS  S +L  G  GKRFA+PN  IMIHQP+GGA GQ  ++EI AR I+  K+    I++  TG+ +E + +D DRD +M+  EA +YG+ID +I
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LISMF (ATP-dependent Clp protease proteolytic subunit OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpP PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 96/178 (53.93%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL LDAQDP KDI L++NSPGGS+SA MAIYD +  V+ADV T+ +GM+AS  S +L  G  GKRFA+PN  IMIHQP+GGA GQ  ++EI AR I+  K+    I++  TG+ +E + +D DRD +M+  EA +YG+ID +I
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LISIN (ATP-dependent Clp protease proteolytic subunit OS=Listeria innocua GN=clpP PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 96/178 (53.93%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL LDAQDP KDI L++NSPGGS+SA MAIYD +  V+ADV T+ +GM+AS  S +L  G  GKRFA+PN  IMIHQP+GGA GQ  ++EI AR I+  K+    I++  TG+ +E + +D DRD +M+  EA +YG+ID +I
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDII 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 94/180 (52.22%), Postives = 132/180 (73.33%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L A+DP KDI L++NSPGGS++A +AIYD +Q ++ DVST+ +GM+AS  + +L  G KGKRFA+PN+ IMIHQP+GGA GQ  ++EI A+ I+  +D   RI++  TG+  E +++D DRD +M+  +A EYGIID V+ R
Sbjct:   13 RGERAYDIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIIDRVLTR 192          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_DESOH2.770e-4949.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THELT3.618e-4952.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANOFW3.618e-4952.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB3.618e-4948.40ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_ALHEH4.725e-4947.92ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RALEJ6.171e-4947.83ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISMO8.059e-4953.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISMF8.059e-4953.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LISIN8.059e-4953.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW8.059e-4952.22ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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