FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP3_FRASC (ATP-dependent Clp protease proteolytic subunit 3 OS=Frankia sp. (strain CcI3) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.923e-42
Identity = 84/172 (48.84%), Postives = 122/172 (70.93%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLKERIVFLG  IDD  A+ +++QLL L+++DP +DI +++NSPGGS ++  AIYD +Q VR D+ST+ +G +AS A+++L  GT GKRFA+ N+RI+IHQP     GQ  D+EIQAREI+  +     +++  TGR+  ++++D +RD+  S  EA EYG+ID VI
Sbjct:   28 DPYSKLLKERIVFLGVQIDDVSANDVMAQLLFLESEDPDRDISIYINSPGGSFTSLTAIYDTMQFVRPDISTICMGQAASAAAVLLAAGTPGKRFALENSRILIHQPSAQGEGQSSDIEIQAREILRVRALQETMLARHTGRTETEIRRDTERDKIFSADEAEEYGLIDEVI 199          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_THEFY (ATP-dependent Clp protease proteolytic subunit 1 OS=Thermobifida fusca (strain YX) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.923e-42
Identity = 88/181 (48.62%), Postives = 124/181 (68.51%), Query Frame = 2
Query:  236 TAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQP-MGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            TA    E +    L +ERI+F+G  IDD  A+ II+Q++ L+  D  +DI L++NSPGGS ++ MAIYD +Q VR D+ TV +G +AS A+++L GGTKGKR A+PN+RI+IHQP   G  GQ  DVEI A EIM  +     I++  TGRS E++ +DI+RD+ ++  EA EYGI+D V+
Sbjct:   34 TAYGVKEMNPYNKLFEERIIFVGVQIDDTSANDIIAQMMTLEHIDSDRDITLYINSPGGSFTSLMAIYDTMQFVRPDIQTVCVGQAASAAAVLLAGGTKGKRTALPNSRILIHQPATEGTHGQASDVEIMANEIMRIRHQLETILAKHTGRSVEEISRDIERDKILTAEEAKEYGIVDDVL 214          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_CORDI (ATP-dependent Clp protease proteolytic subunit 1 OS=Corynebacterium diphtheriae GN=clpP1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.923e-42
Identity = 87/176 (49.43%), Postives = 122/176 (69.32%), Query Frame = 2
Query:  254 EADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQP-MGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            E +    L +ERI+FLG  +DD  A+ I++QLL+L+  DP +DI +++NSPGGS ++ MAIYD +Q VR DV TV LG +AS A+++L  G  GKR  +PN+R++IHQP   G  GQV D+EIQA+EI   +    + ++  TGRS EQV+ D DRD+ ++  EAVEYGI+D V D
Sbjct:   28 ETNPYAKLFEERIIFLGTQVDDTSANDIMAQLLVLEGLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRPDVRTVCLGQAASAAAVLLAAGAPGKRACLPNSRVLIHQPATQGTQGQVSDLEIQAKEIERMRTLMEQTLARHTGRSAEQVRIDTDRDKILTAEEAVEYGIVDQVFD 203          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_BACC1 (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus cereus (strain ATCC 10987) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.923e-42
Identity = 81/174 (46.55%), Postives = 123/174 (70.69%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            D    LLK+RI+ +G+ I+D VA ++++QLL L+A+D  KDI L++NSPGGS  A  AI D + L+  +V T+ +G++AS  +L+L  G KGKRFA+PN+ IMIHQP+GG  GQ  ++EI A+ I+  K +  +II+  TG+  E++  D +RD +M+  EA EYGI+DGV+++
Sbjct:   19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTXAGFAILDXMNLIXPEVQTLCMGLAASFGALLLLAGAKGKRFALPNSEIMIHQPLGGVKGQATEIEITAKRILKLKHDINKIIADRTGQPIEKIAHDTERDYFMTAEEAKEYGIVDGVVEK 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_TROW8 (ATP-dependent Clp protease proteolytic subunit 2 OS=Tropheryma whipplei (strain TW08/27) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.511e-42
Identity = 87/182 (47.80%), Postives = 126/182 (69.23%), Query Frame = 2
Query:  236 TAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGAS--GQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            TA    + D    L ++RIVFLG  IDD  AD +++QLL+L+ QD  +DI +++NSPGGS +A  AIYD +Q +R  + TV LG +AS A++IL  GT GKR A+PN RI+IHQP+  +S  GQ  D+EIQAREIM  ++   + ++  + +S +QV KDIDRD+ +S  +A+EYG+ID ++
Sbjct:   16 TAYGYKQVDPYTKLFEDRIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQALEYGLIDQIL 197          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_TROWT (ATP-dependent Clp protease proteolytic subunit 1 OS=Tropheryma whipplei (strain Twist) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.511e-42
Identity = 87/182 (47.80%), Postives = 126/182 (69.23%), Query Frame = 2
Query:  236 TAMRGAEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGAS--GQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            TA    + D    L ++RIVFLG  IDD  AD +++QLL+L+ QD  +DI +++NSPGGS +A  AIYD +Q +R  + TV LG +AS A++IL  GT GKR A+PN RI+IHQP+  +S  GQ  D+EIQAREIM  ++   + ++  + +S +QV KDIDRD+ +S  +A+EYG+ID ++
Sbjct:   16 TAYGYKQVDPYTKLFEDRIVFLGVQIDDASADDVMAQLLVLEGQDAERDIIMYINSPGGSFTAMTAIYDTMQYIRPQIQTVCLGQAASAAAVILSAGTPGKRLALPNARILIHQPVVASSGYGQASDIEIQAREIMRMREWLEKTLAQHSNKSVKQVSKDIDRDKILSSEQALEYGLIDQIL 197          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_NEIMB (ATP-dependent Clp protease proteolytic subunit OS=Neisseria meningitidis serogroup B GN=clpP PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 86/188 (45.74%), Postives = 127/188 (67.55%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPM--GGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPL 799
            RG  A D    LLKERIVFL   + D  A+ +++QLL L++++P KDI  ++NSPGGS++A M+IYD +  ++ DVST+ LG +AS  + +L  G KGKRFA+PN+RIMIHQP+  GG  GQ  D+EI ARE++  K+   R+++    R    +++D DRD +MS  EA EYG+ID +++  + + L
Sbjct:   17 RGERAFDIYSRLLKERIVFLVGPVTDESANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLMAKHCDRDLADLERDTDRDNFMSAEEAKEYGLIDQILENRASLRL 204          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CAMJR (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter jejuni (strain RM1221) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 82/174 (47.13%), Postives = 122/174 (70.11%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            D    LLK+RI+ L   I D +A +I++QLL L+A+DPTKDI L++NSPGG +++  +IYD +  ++ DV T+ +G +AS  + +L  G +GKRFA+PN+RIMIHQP+GGA GQ  D+EIQA+EI+  K     I++  T +   ++ KD +RD +MS  EA EYG+ID V+++
Sbjct:   18 DIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKEYGLIDKVLEK 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CAMJJ (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=clpP PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 82/174 (47.13%), Postives = 122/174 (70.11%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            D    LLK+RI+ L   I D +A +I++QLL L+A+DPTKDI L++NSPGG +++  +IYD +  ++ DV T+ +G +AS  + +L  G +GKRFA+PN+RIMIHQP+GGA GQ  D+EIQA+EI+  K     I++  T +   ++ KD +RD +MS  EA EYG+ID V+++
Sbjct:   18 DIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSTQEAKEYGLIDKVLEK 191          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CAMJE (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter jejuni GN=clpP PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.280e-42
Identity = 82/174 (47.13%), Postives = 122/174 (70.11%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            D    LLK+RI+ L   I D +A +I++QLL L+A+DPTKDI L++NSPGG +++  +IYD +  ++ DV T+ +G +AS  + +L  G +GKRFA+PN+RIMIHQP+GGA GQ  D+EIQA+EI+  K     I++  T +   ++ KD +RD +MS  EA EYG+ID V+++
Sbjct:   18 DIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQKVAKIAKDTERDFFMSAQEAKEYGLIDKVLEK 191          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_FRASC1.923e-4248.84ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP1_THEFY1.923e-4248.62ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_CORDI1.923e-4249.43ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BACC11.923e-4246.55ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP2_TROW82.511e-4247.80ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_TROWT2.511e-4247.80ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_NEIMB3.280e-4245.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMJR3.280e-4247.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMJJ3.280e-4247.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMJE3.280e-4247.13ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
back to top