FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RICCK (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia canadensis (strain McKiel) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.078e-41
Identity = 80/190 (42.11%), Postives = 127/190 (66.84%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            +S  P       RG  A D    LLKERI+F+ + ++D +A+ I++QLL L+A++P KDI +++NSPGG ++A +AIYD +Q ++  V+T+ +G + S  S +L GG KG R+++P++RIMIHQP GG  GQ  D+EI A+E +  K     + S  TG+  + ++K ++RD +MSP EA ++GI+D +I
Sbjct:    1 MSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRIMIHQPSGGYQGQATDIEIHAQETLKIKRLLNELYSKHTGQDVKHIEKSMERDNFMSPEEAKKFGIVDNII 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RICBR (ATP-dependent Clp protease proteolytic subunit OS=Rickettsia bellii (strain RML369-C) GN=clpP PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.078e-41
Identity = 84/196 (42.86%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  206 PLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            P+S  P       RG  A D    LLKERI+F+   I+D +A+ I +QLL L+A++P KDI +++NSPGG ++A +AIYD +Q ++  V+T+ +G + S  S +L GG KG R+++P++R+MIHQP GG  GQ  D+EI A+E +  K     + S  TG+  + V+K ++RD +MSP EA ++GIID +I    I
Sbjct:   22 PMSYVPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIHQPSGGYRGQATDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKSMERDNFMSPEEAKKFGIIDKIITHRDI 217          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LACLS (ATP-dependent Clp protease proteolytic subunit OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.078e-41
Identity = 85/193 (44.04%), Postives = 127/193 (65.80%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGA--SGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            P     + RG  A D    LLK+RI+ L   ++D +A++II+QLL LDAQD TKDI L+VN+PGGS+SA +AI D +  +++DV T+ +GM+AS  ++I   GTKGKRF +PN   +IHQPMGGA    Q  D+ I A +++  +    +I++  + RS EQ+ KD +RD +M   E +EYG ID +++ +S+
Sbjct:    6 PTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVLTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADNSNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSL 198          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ANAPZ (ATP-dependent Clp protease proteolytic subunit OS=Anaplasma phagocytophilum (strain HZ) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.078e-41
Identity = 83/192 (43.23%), Postives = 126/192 (65.62%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            ++  P       RG  A D    LLKERI+F+   I+D +A  I++QL+ L+A+DP KDI +++NSPGG ++A ++IYD +Q ++ +V+T+ LG +AS  SL+L  G  G R A+PN+R+MIHQP GG  GQ  D+EI AREI+  K     I    TG+S E+++  ++RD +M   +A ++GIID VI++
Sbjct:    1 MNLVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDISMYINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRVMIHQPSGGFRGQATDIEIHAREILEIKRRLNEIFVRHTGKSLEEIESSMERDNFMIAEKARDFGIIDKVIEK 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_RHIL3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.078e-41
Identity = 83/190 (43.68%), Postives = 122/190 (64.21%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKERI+FL   ++D +A  + +QLL L+A++P K+I L++NSPGG ++A MAIYD +Q ++  VST+ +G +AS  SL+L  G K  RFA PN+RIM+HQP GG  GQ  D+E  AR+I+  K     +    TGR++E+V+K +DRD +M   EA  +G+ID V+
Sbjct:    1 MALVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIALYINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMVHQPSGGFQGQASDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKTLDRDHFMDADEAQSWGVIDKVL 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STRS2 (ATP-dependent Clp protease proteolytic subunit OS=Streptococcus suis (strain 98HAH33) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.055e-40
Identity = 80/179 (44.69%), Postives = 120/179 (67.04%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASG--QVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            D    LLK+RI+ L   ++D +A++II+QLL LDAQDPTKDI L+VN+PGGS+SA +AI D +  ++ADV T+ +G +AS  ++I   G KGKRF +PN   MIHQPMGG  G  Q  D+ I A  ++  ++   +I++  +G++ +Q+ KD +RD +MS  E + YG ID ++D   +
Sbjct:   17 DIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGKTVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKV 195          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LAWIP (ATP-dependent Clp protease proteolytic subunit OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.055e-40
Identity = 79/172 (45.93%), Postives = 119/172 (69.19%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    LLK+RIV LG  ++D VA  I +QLL L++QDP K+I L++NSPGGS++A +AIYD +  +  +V+TV +G +AS  +L+L  G K  R+A+PN+++MIHQP+GG  GQ  D++I AREI+  +     I+   TG+S E+V +D +RD +M+  +A  YG+ID V+
Sbjct:   24 DIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDPEKEIYLYINSPGGSVTAGLAIYDTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALPNSQVMIHQPLGGYQGQATDIDIHAREILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMTAEDAKAYGLIDKVL 195          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CAUSK (ATP-dependent Clp protease proteolytic subunit OS=Caulobacter sp. (strain K31) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.055e-40
Identity = 83/189 (43.92%), Postives = 122/189 (64.55%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            ++  P       RG  A D    LLKERI+FL   ++D +A  I +QLL L++++P K+I +++NSPGG ++A +AIYD +Q +++ VSTV +GM+AS  SL+L  G  G R A+PN RIM+HQP GG  GQ  D+E  A +I+  K     I    TGR++E+V+K +DRD +MS  EA  +G+ID +
Sbjct:    9 MNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLQAGAPGHRIALPNARIMVHQPSGGFRGQASDIERHAEDIIKTKRRLNEIYVKHTGRTYEEVEKTLDRDHFMSAEEAKAWGLIDHI 197          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BART1 (ATP-dependent Clp protease proteolytic subunit OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=clpP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.055e-40
Identity = 83/190 (43.68%), Postives = 122/190 (64.21%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            LS  P       RG  A D    LLKERI+F+   ++D +A  + +QLL L+A++P K+I L++NSPGG +++ MAIYD +Q +R  VST+ +G +AS  SL+L  G KG RFA+PN RIM+HQP GG  GQ  D+E  A++I+  K     I    TG+ +E +++ +DRD +M+  EA  +G++D VI
Sbjct:    9 LSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFALPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQGYEVIERTLDRDHFMTAEEAKAFGLVDDVI 198          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BARQU (ATP-dependent Clp protease proteolytic subunit OS=Bartonella quintana GN=clpP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.055e-40
Identity = 82/190 (43.16%), Postives = 122/190 (64.21%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            LS  P       RG  A D    LLKERI+F+   ++D +A  + +QLL L+A++P K+I L++NSPGG +++ MAIYD +Q +R  VST+ +G +AS  SL+L  G KG RF +PN RIM+HQP GG  GQ  D+E  A++I+  K     I    TG+ +E +++ +DRD +M+  EA ++G++D VI
Sbjct:    9 LSLVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMVHQPSGGFQGQASDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERTLDRDHFMTAEEAKQFGLVDDVI 198          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_RICCK8.078e-4142.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RICBR8.078e-4142.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACLS8.078e-4144.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAPZ8.078e-4143.23ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_RHIL38.078e-4143.68ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_STRS21.055e-4044.69ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LAWIP1.055e-4045.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAUSK1.055e-4043.92ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BART11.055e-4043.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BARQU1.055e-4043.16ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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