FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.059e-49
Identity = 91/188 (48.40%), Postives = 136/188 (72.34%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P     + RG  A D    LL++RI+FLG  +DD +A+ I++Q+L L+++DP KDI L++NSPGGS+ A MAIYD +Q ++ DVST+ +G++AS  + +L GG KGKR A+P+ RIMIHQP+GGA G   D+EIQA+EI+  K++   +++  TG+  E++++D DRD +M+P +A EYG+ID VI R
Sbjct:    3 PTVIEQSARGERAFDIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEILFIKNSLNSLLAYHTGQPLERIERDTDRDNFMTPEQAKEYGLIDQVITR 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAHJ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.053e-48
Identity = 94/186 (50.54%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  ++   +I++  TG+S E++QKD DRD +++  EA EYG+ID V+
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLIDNVM 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RUBXD (ATP-dependent Clp protease proteolytic subunit OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=clpP PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.053e-48
Identity = 96/192 (50.00%), Postives = 136/192 (70.83%), Query Frame = 2
Query:  206 PLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQP-MGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    P     + RG  A D    LLK+RI+FLG  +DD VA+AI++QLL L+++DP +DI L++NSPGGS+SA +AIYD +Q V+ D+ T ALGM+AS  + +L  GTKGKRFA+PNTRI++HQP +GG +GQ  DVEI ARE++  K     I+S  TG+ ++++++D DRD  M   EA+EYG+ID ++
Sbjct:    6 PQGVIPYVIEQSPRGERAMDIYSRLLKDRIIFLGTPVDDQVANAIMAQLLHLESEDPEQDINLYINSPGGSVSAGLAIYDTMQFVKPDIVTTALGMAASMGAFLLAAGTKGKRFALPNTRILLHQPAVGGLAGQASDVEIHARELIRTKRRLNEILSEHTGQPYDKIERDTDRDFIMGAEEAIEYGLIDDIV 197          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RALME (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=clpP PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.375e-48
Identity = 96/207 (46.38%), Postives = 139/207 (67.15%), Query Frame = 2
Query:  170 LALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 787
            LA  Q        L   P     + RG  A D    LLKER+VF+   ++D  A+ +++QLL L++++P KD+ L++NSPGGS+SA +AIYD +Q ++ DV T+ +GM+AS  + +L  G KGKR A+PN+RIMIHQP+GGA GQ  D+EIQAREI++ ++    I+S  TG+  E++ +D DRD +MS  +AV+YG+ID VI R S
Sbjct:   10 LATTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSLYINSPGGSVSAGLAIYDTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNSILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVITRRS 216          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.375e-48
Identity = 95/201 (47.26%), Postives = 141/201 (70.15%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI-DRDSIIPLVPVPEK 817
            P     + RG  A D    LLK+RI+FLG+ +DD VA+ I++QLL L+++DP KDI  ++NSPGG ++A MA+YD +Q ++ DV+TV +G +AS  +L+L  G KGKRF++PN+RIMIHQP+GGA GQ  D++IQA EI+  K+  + I+S  TG++F+++ +D DRD +MS  +A EYG++D V+  RD +       EK
Sbjct:    5 PMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVDHVVASRDELEKAEAAKEK 205          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RALEH (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=clpP PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48
Identity = 95/205 (46.34%), Postives = 139/205 (67.80%), Query Frame = 2
Query:  170 LALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            LA  Q        L   P     + RG  A D    LLKER+VF+   ++D  A+ +++QLL L++++P KD+ L++NSPGGS+SA +AIYD +Q ++ DVST+ +GM+AS  + +L  G KGKR A+PN+RIMIHQP+GGA GQ  D+EIQAREI++ ++    I+S  TG+  E++ +D DRD +MS  +AV+YG+ID V+ R
Sbjct:   10 LATTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVLAR 214          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DESAA (ATP-dependent Clp protease proteolytic subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=clpP PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48
Identity = 95/199 (47.74%), Postives = 136/199 (68.34%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI----DRDSI 790
            +S  P       RG    D    LLK+RI+FLG  ++D VA++II+QLL L++ DP KDI  ++NSPGGS++A MAIYD +  ++ +++TV +G +AS  +++L  G  GKR+++PN RI+IHQPMGG  GQ  D+ IQA+EI+  K+    I++  TG+  +QVQ+D DRD +MSP+EA EYG+ID VI    D DSI
Sbjct:    1 MSYIPYVVEQTSRGERTYDIYSRLLKDRIIFLGTEVNDVVANSIIAQLLFLESDDPEKDINFYINSPGGSVTAGMAIYDTMAYIKPEITTVCIGQAASMGAVLLAAGNHGKRYSLPNARILIHQPMGGFQGQASDIAIQAQEILRMKEALNEILASHTGKPLKQVQQDTDRDYFMSPLEAKEYGLIDHVILNREDLDSI 199          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CUPTR (ATP-dependent Clp protease proteolytic subunit OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=clpP PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48
Identity = 95/205 (46.34%), Postives = 139/205 (67.80%), Query Frame = 2
Query:  170 LALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            LA  Q        L   P     + RG  A D    LLKER+VF+   ++D  A+ +++QLL L++++P KD+ L++NSPGGS+SA +AIYD +Q ++ DVST+ +GM+AS  + +L  G KGKR A+PN+RIMIHQP+GGA GQ  D+EIQAREI++ ++    I+S  TG+  E++ +D DRD +MS  +AV+YG+ID V+ R
Sbjct:   10 LATTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVLAR 214          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.345e-48
Identity = 90/195 (46.15%), Postives = 138/195 (70.77%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            +S  P       RG  + D    LLK+RIVFLG+ I+D +++ II+QLL L+A+DP KDI L++NSPGGS++A +A+YD +Q ++ DV+T+ +G +AS  +L+L  GTKGKR+A+PN R+MIHQP GG  G+  + EI  +E++  ++    I+S  TG+S EQ+ KD+++D +M+  EA+EYGIID VI ++ +
Sbjct:    1 MSLIPVVVEQTNRGERSYDIYSRLLKDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPGGSVTAALAMYDTIQYIKPDVATICMGQAASAGALLLASGTKGKRYALPNARVMIHQPAGGVQGKATEAEIHIKELLRLRERLNEILSKHTGKSVEQISKDVEQDYFMTAEEALEYGIIDEVITKNEL 195          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus halodurans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.063e-48
Identity = 92/179 (51.40%), Postives = 129/179 (72.07%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVID 778
            RG  A D    LLK+RI+ LG  IDD VA++I++QLL L A+DP KDI L++NSPGGS++A MAIYD +Q ++ +VST+ +GM+AS  + +L  G KGKRFA+PN+ +MIHQP+GG  GQ  D+EI  R I+  ++   RI++  TG+  EQ+ KD DRD +M+  +A EYG+ID VI+
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKAREYGLIDKVIE 191          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_SYNJA8.059e-4948.40ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_STAHJ1.053e-4850.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RUBXD1.053e-4850.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RALME1.375e-4846.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH1.375e-4847.26ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RALEH1.795e-4846.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAA1.795e-4847.74ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CUPTR1.795e-4846.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH2.345e-4846.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_BACHD3.063e-4851.40ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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