FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_RALSO (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia solanacearum GN=clpP PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.224e-48
Identity = 94/205 (45.85%), Postives = 139/205 (67.80%), Query Frame = 2
Query:  170 LALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            LA  Q        L   P     + RG  A D    LLKER++F+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA +A+YD +Q V+ DVST+ +GM+AS  + +L  G KGKR+A+PN+RIMIHQP+GGA GQ  D+EIQAREI++ ++    I+S  TG+  +++ +D DRD +MS  +A EYG+ID V+ R
Sbjct:   10 LARTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVLAR 214          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_MAGSM (ATP-dependent Clp protease proteolytic subunit OS=Magnetococcus sp. (strain MC-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.224e-48
Identity = 91/190 (47.89%), Postives = 132/190 (69.47%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            +S  P    T  RG  A D    LLKER+VFL   +++ +A+ +++QLL L++++P KDI L++NSPGGS++A MAIYD +Q +R  VST+ +G +AS  +++L  G  GKR  +PN R+MIHQP+GG SGQ  D EI AREI+  ++N  +++S  TG+  EQVQ D +RD ++S  EAVEYG++D VI
Sbjct:    1 MSLVPMVVETTNRGERAYDIYSRLLKERVVFLVGQVEEHMANLVVAQLLFLESENPEKDIHLYINSPGGSVTAGMAIYDTMQFIRPSVSTLCIGQAASMGAVLLAAGEAGKRLVLPNARVMIHQPLGGFSGQASDFEIHAREILRIRENLNQVLSHHTGKPLEQVQLDTERDNFLSATEAVEYGLVDKVI 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_PSEMY (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas mendocina (strain ymp) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 88/188 (46.81%), Postives = 132/188 (70.21%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P     + RG  A D    LLKER++FL   ++D++A+ I +QLL L+A++P KDI L++NSPGGS++A MAIYD +Q ++ADVST  +G + S  + +L GG KGKRF +PN+R+MIHQP+GG  GQ  D+EI A+EI+  ++    +++  TG+S E +++D +RD +MS   AVEYGI+D V ++
Sbjct:   21 PMVIEQSARGERAYDIYSRLLKERVIFLVGQVEDYMANLICAQLLFLEAENPDKDIHLYINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNELLAHHTGQSLETIERDTNRDNFMSAPRAVEYGIVDAVHEK 208          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DEHSC (ATP-dependent Clp protease proteolytic subunit OS=Dehalococcoides sp. (strain CBDB1) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 95/193 (49.22%), Postives = 136/193 (70.47%), Query Frame = 2
Query:  206 PLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P +  P    ++ RG  A D   LLLKERI+FLG+ I+D VA+ +I+QLL LD +DP KDI L+++SPGG +SA +A+YD +QL+R  VST+ +G++AS A+++L  G KGKR+A+PN  I +HQ MGGA GQ  D+EI AREIM  +D    I+   TG++ E++  D DRD Y+S  +AVEYG+ID ++ +
Sbjct:    4 PENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQTMEKIVHDSDRDYYLSAQQAVEYGLIDEILQK 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_DEHSB (ATP-dependent Clp protease proteolytic subunit OS=Dehalococcoides sp. (strain BAV1) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 95/193 (49.22%), Postives = 136/193 (70.47%), Query Frame = 2
Query:  206 PLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            P +  P    ++ RG  A D   LLLKERI+FLG+ I+D VA+ +I+QLL LD +DP KDI L+++SPGG +SA +A+YD +QL+R  VST+ +G++AS A+++L  G KGKR+A+PN  I +HQ MGGA GQ  D+EI AREIM  +D    I+   TG++ E++  D DRD Y+S  +AVEYG+ID ++ +
Sbjct:    4 PENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIAQLLFLDREDPDKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVAASMATVLLCAGAKGKRYALPNATIHMHQAMGGAQGQASDIEIAAREIMRQQDILRNILVKHTGQTMEKIVHDSDRDYYLSAQQAVEYGLIDEILQK 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CHLPD (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium phaeobacteroides (strain DSM 266) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 99/205 (48.29%), Postives = 141/205 (68.78%), Query Frame = 2
Query:  212 SSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEKVK 823
            S  P    T+ RG  A D    LL+ERI+FLG+ ID+ VA  I++QL+ L+++DP +DI ++VNSPGGS+SA + IYD +Q +R DVSTV +GM+AS  + +L  GTKGKR ++P++RIMIHQP GGA GQ  D+ IQAREI   +     I++  TG+  +QV++D +RDR+M+  EA+EYGIID + ++       P P+K K
Sbjct:   27 SLVPMVIETSGRGERAFDIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHSRIMIHQPSGGAQGQESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAQEALEYGIIDQIFEKR------PKPDKEK 225          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURTA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 92/189 (48.68%), Postives = 133/189 (70.37%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            L   P    T+ RG  + D    LLKERIVF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q V+ DVST+ +G++AS  + +L  G KGKR+A+PN R+MIHQP+GGA GQ  D+EIQAREI++ KD    +++  TG+  E++ +D DRD +MS  +A  YG+ID V
Sbjct:   14 LGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURS3 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp. (strain 383) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 90/190 (47.37%), Postives = 136/190 (71.58%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            L   P    T+ RG  + D    LLKER+VF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q ++ DVST+ +G++AS  + +L  G KGKRFA+PN+R+MIHQP+GGA GQ  D+EIQAREI++ K+   ++++  TG+  E++ +D DRD +MS  +A  YG+ID V+
Sbjct:   24 LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BACA2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 89/182 (48.90%), Postives = 134/182 (73.63%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 787
            RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L+A+DP KDI +++NSPGGS++A MAIYD +Q ++  VST+ +GM+AS  + +L  G KGKR+A+PN+ +MIHQP+GGA GQ  ++EI A+ I+  +D   ++++  TG+  E +++D DRD + S  EA+EYG+ID V+ R++
Sbjct:   13 RGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEALEYGLIDKVLTRNT 194          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_ANASP (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.823e-48
Identity = 92/180 (51.11%), Postives = 131/180 (72.78%), Query Frame = 2
Query:  245 RGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDR 781
            RG  A D    LL+ERIVFLG  +D  +A+ I++QLL LDA+DP KDI L++NSPGGS++A M I+D ++ +R DV T+  G++AS  + +L  G KGKR ++P++RIMIHQP+GGA GQ  D+EIQAREI+++K      ++  TG+  E++ +D +RD +MSP EA +YG+ID VIDR
Sbjct:   12 RGERAFDIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIFDTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEIQAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVIDR 191          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_RALSO5.224e-4845.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MAGSM5.224e-4847.89ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEMY6.823e-4846.81ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DEHSC6.823e-4849.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DEHSB6.823e-4849.22ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLPD6.823e-4848.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURTA6.823e-4848.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURS36.823e-4847.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACA26.823e-4848.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_ANASP6.823e-4851.11ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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