FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_JANMA (ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium sp. (strain Marseille) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 94/190 (49.47%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            L   P     + RG  A D    LLKERI+FL   ++D +A+ I++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q ++ +VST+  G++AS  + +L  G KGKRF++PN+RIMIHQP+GGA GQ  D+EIQAREI++ ++    I++  TG+S E++ KD DRD +MS   AV YG+ID V+
Sbjct:   17 LGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAKDTDRDNFMSADAAVTYGMIDKVL 206          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURVG (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 90/190 (47.37%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            L   P    T+ RG  + D    LLKER+VF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q ++ DVST+ +G++AS  + +L  G KGKRFA+PN+R+MIHQP+GGA GQ  D+EIQAREI++ K+    +++  TG+  E++ +D DRD +MS  +A  YG+ID V+
Sbjct:   24 LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSDDAKAYGLIDQVL 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURCM (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 90/190 (47.37%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            L   P    T+ RG  + D    LLKER+VF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q ++ DVST+ +G++AS  + +L  G KGKRFA+PN+R+MIHQP+GGA GQ  D+EIQAREI++ K+    +++  TG+  E++ +D DRD +MS  +A  YG+ID V+
Sbjct:   24 LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURCH (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain HI2424) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 90/190 (47.37%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            L   P    T+ RG  + D    LLKER+VF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q ++ DVST+ +G++AS  + +L  G KGKRFA+PN+R+MIHQP+GGA GQ  D+EIQAREI++ K+    +++  TG+  E++ +D DRD +MS  +A  YG+ID V+
Sbjct:   24 LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURCA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 90/190 (47.37%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            L   P    T+ RG  + D    LLKER+VF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q ++ DVST+ +G++AS  + +L  G KGKRFA+PN+R+MIHQP+GGA GQ  D+EIQAREI++ K+    +++  TG+  E++ +D DRD +MS  +A  YG+ID V+
Sbjct:   24 LGLVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 97/192 (50.52%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  203 VPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            +P    P       RG  + D    LLK+RIVFLG  IDD VA+ +I+QLL L+++DP KDI L++NSPGGS+++ +AIYD +Q V+  VST+ LG +AS  + +L GG  GKRFA+PN RIMIHQPMGG  GQ  D++IQAREI+  K     I++  T +  E+++KD DRD +M   EA EYG+ID VI
Sbjct:    1 MPYIPMPYVVEQTHRGERSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIHQPMGGFQGQATDIDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFMGAGEAKEYGLIDEVI 192          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_PORGI (ATP-dependent Clp protease proteolytic subunit OS=Porphyromonas gingivalis GN=clpP PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.164e-47
Identity = 91/178 (51.12%), Postives = 129/178 (72.47%), Query Frame = 2
Query:  251 AEADAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRD 784
            A+ D    L+ +RI+FLG  IDD+ A+ I +QLL LD+ DP KDI +++NSPGGS+ A   IYD +Q +  DV+T+  GM+AS AS++L  GTKGKRFA+P++R+MIHQP+GG  GQ  D+EI AREI+  K     IIS  +G+  EQV+KD DRD +M+  EA+EYG+ID +++++
Sbjct:   43 AQMDVFSRLMMDRIIFLGTQIDDYTANVIQAQLLYLDSADPGKDISIYLNSPGGSVYAGYGIYDTMQYIGCDVATICTGMAASMASVLLVAGTKGKRFALPHSRVMIHQPLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEALEYGMIDKILEKN 220          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.164e-47
Identity = 93/186 (50.00%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            P    +  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A MAIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI AR I+  ++   RI++  TG+  E+++KD DRD +++  EA  YG+ID V+
Sbjct:    5 PTVIESTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEAKAYGLIDEVM 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.164e-47
Identity = 95/200 (47.50%), Postives = 135/200 (67.50%), Query Frame = 2
Query:  203 VPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPL 799
            +P    P       RG  + D +  LLK+RIV LG  IDD VA+ I++QLL L+++DP KDI L++NSPGGS++A +AIYD +Q V+  VST+ +G +AS  +++L  G KGKR+A+P++RIMIHQP+GG  GQ  D+EIQA+EI+  K     +I   TG+S E+V+KD DRD +M   EA  YGIID + +   ++ L
Sbjct:    1 MPFMPVPYVIEQTHRGERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKVVGL 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.164e-47
Identity = 89/172 (51.74%), Postives = 130/172 (75.58%), Query Frame = 2
Query:  260 DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            D    L  +RI+FLG  +DD +A+AII+ +L LD++DP KDI L++NSPGGS+SA +AIYD +Q VRADV+T+ +G++AS  S +L  G KGKR ++P++RIMIHQP+GGA GQ  D+ IQA+EI++ KD   +I+S  TG+  E++++D DRD +MS  +A +YG+ID V+
Sbjct:   21 DIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQYGLIDQVV 192          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_JANMA8.911e-4849.47ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURVG8.911e-4847.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCM8.911e-4847.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCH8.911e-4847.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCA8.911e-4847.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADF8.911e-4850.52ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PORGI1.164e-4751.12ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ1.164e-4750.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXA1.164e-4747.50ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_GLOVI1.164e-4751.74ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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