FC878080

Overview
NameFC878080
Unique NameFC878080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13805 contig Ccv1_Contig13805:89..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_LACF3 (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 89/195 (45.64%), Postives = 140/195 (71.79%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSI 790
            ++  P     + RG  A D    LLK+RI+ L   I+D +A++I++QLL LDAQD TKDI L++NSPGG +++ MAIYD +  +++DV T+ +GM+AS AS+++  GTKGKRF +P++ +MIHQP GGA GQ  +++I A EI+  +     I++  +G+SFEQV++D +RD Y++  EAV+YG++DGV+D +++
Sbjct:    1 MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDNMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKSDVQTIVIGMAASMASVLVSSGTKGKRFGLPHSTVMIHQPSGGAQGQQTEIQIAAEEILKTRKMINEILAKNSGQSFEQVEQDTERDHYLTAQEAVDYGLLDGVMDSNNL 195          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_ENTFA (ATP-dependent Clp protease proteolytic subunit OS=Enterococcus faecalis GN=clpP PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 95/192 (49.48%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSII 793
            P     + RG  A D    LLK+RI+ L   IDD VA+++I+QLL LDAQD  KDI L++NSPGGS+SA +AI+D +  V+ADV T+ LGM+AS  S +L  G KGKRFA+PN  IMIHQP+GGA GQ  ++EI AR I+  +     I++  TG+  E +++D DRD YM+  +A EYG+ID V++  S +
Sbjct:    5 PTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIDDNVANSVIAQLLFLDAQDSEKDIYLYINSPGGSVSAGLAIFDTMNFVKADVQTIVLGMAASMGSFLLTAGQKGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILDTRQRLNSILAERTGQPIEVIERDTDRDNYMTAEQAKEYGLIDEVMENSSAL 196          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURP1 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1710b) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 91/189 (48.15%), Postives = 133/189 (70.37%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            L   P    T+ RG  + D    LLKERIVF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q V+ DVST+ +G++AS  + +L  G KGKR+A+PN R+MIHQP+GGA GQ  D+EIQAREI++ +D    +++  TG+  E++ +D DRD +MS  +A  YG+ID V
Sbjct:   14 LGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_BURMA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei GN=clpP PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 91/189 (48.15%), Postives = 133/189 (70.37%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            L   P    T+ RG  + D    LLKERIVF+   ++D  A+ +++QLL L++++P KDI L++NSPGGS+SA MAIYD +Q V+ DVST+ +G++AS  + +L  G KGKR+A+PN R+MIHQP+GGA GQ  D+EIQAREI++ +D    +++  TG+  E++ +D DRD +MS  +A  YG+ID V
Sbjct:   14 LGLVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.985e-47
Identity = 92/190 (48.42%), Postives = 128/190 (67.37%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            +S  P       RG  + D    LLK+RI+FLG  ++D  A  +++QLL L+A+DP KDI L++NSPGGS++A MAIYD +Q ++ DVST+ +GM+AS  + +L  G KGKRFA+PN+ IMIHQP+GG  GQ  D+ I A  I+  KD    I+S  TG+  E ++KD++RD +M   EA EYG+ID VI
Sbjct:    1 MSLVPVVVEQTNRGERSYDIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEAKEYGLIDDVI 190          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP2_BURXL (ATP-dependent Clp protease proteolytic subunit 2 OS=Burkholderia xenovorans (strain LB400) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.985e-47
Identity = 92/203 (45.32%), Postives = 137/203 (67.49%), Query Frame = 2
Query:  167 TLALQQQQRQHDVPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGV 772
            TL  Q  +      L   P    T+ RG  + D    LLKERIVFL   ++D  A+ +++Q+L L++++P KDI  ++NSPGGS+SA MAIYD +Q ++ DVST+ +G++AS  + +L  G KGKRFA+PN+R+MIHQP+GGA GQ  D+EIQAREI++ K+    +++  TG+  E++ +D DRD +MS  +A  YG++D V
Sbjct:   10 TLTSQSSRDLEAQALGLVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHHTGQPVERIARDTDRDNFMSGDDAQAYGLVDQV 212          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.985e-47
Identity = 95/200 (47.50%), Postives = 134/200 (67.00%), Query Frame = 2
Query:  203 VPLSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDSIIPL 799
            +P    P       RG  + D    LLK+RIV LG  IDD VA+ I++QLL L+++DP KDI L++NSPGGS++A +AIYD +Q V+  VST+ +G +AS  +++L  G KGKR+A+P++RIMIHQP+GG  GQ  D+EIQA+EI+  K     +I   TG+S E+V+KD DRD +M   EA  YGIID + +   ++ L
Sbjct:    1 MPFMPVPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKVVGL 200          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SYNFM (ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 96/198 (48.48%), Postives = 137/198 (69.19%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI-DRDSIIP 796
            +S  P     + RG  A D    LL++RI+FLG  I D VA+ II+QLL L+++DP KDI  ++NSPGG ++A +AIYD +Q ++ +VST+ +G +AS A+++L  G KGKR+A+P+ RIM+HQPMGG  GQ  DVEIQA+EI+  ++    I+   TGR  EQ+Q+D DRD YMS  +A EYG++D +   R SI+P
Sbjct:    1 MSLIPIVVEQSSRGERAFDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPGGLVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQGQATDVEIQAKEILKLREELNDILVRHTGRPVEQIQRDTDRDFYMSGEQAREYGMVDHIFTSRLSILP 198          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 92/190 (48.42%), Postives = 131/190 (68.95%), Query Frame = 2
Query:  221 PQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVIDRDS 787
            P    T  RG  A D    LLK+RI+ LG+ IDD VA++I+SQLL L AQD  KDI L++NSPGGS++A  AIYD +Q ++ DV T+ +GM+AS  S +L  G KGKRFA+PN  +MIHQP+GGA GQ  ++EI A  I+  +    +I++  TG+S E++++D DRD ++S  EA +YG++D V+  +S
Sbjct:    5 PTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTRAKLNQILAERTGQSIEKIEQDTDRDNFLSAEEAKDYGLVDQVMVPES 194          
BLAST of FC878080 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.593e-47
Identity = 85/190 (44.74%), Postives = 133/190 (70.00%), Query Frame = 2
Query:  209 LSSAPQTPATAMRGAEA-DAMGLLLKERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFVNSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRIMIHQPMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYGIIDGVI 775
            ++  P       RG  + D    LLKER++FL   ++D +A+ I++Q+L L+A++P KDI L++NSPGG ++A M+IYD +Q ++ DVST+ +G +AS  + +L  G KGKRF +PN+R+MIHQP+GG  GQ  D+EI AREI+  K     +++  TG+S EQ+++D +RDR++S  EAVEYG++D ++
Sbjct:   14 MALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
The following BLAST results are available for this feature:
BLAST of FC878080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_LACF31.520e-4745.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ENTFA1.520e-4749.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP11.520e-4748.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMA1.520e-4748.15ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN1.985e-4748.42ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BURXL1.985e-4745.32ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_MYXXD1.985e-4747.50ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SYNFM2.593e-4748.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAS12.593e-4748.42ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTY2.593e-4744.74ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878080 ID=FC878080; Name=FC878080; organism=Citrus clementina; type=EST; length=837bp
TTTTTTTTTTTTTTGAACACTAATGGATTTGCTTTCAGTCTCTTCCGCTT
CAACCTCTCACCTCCCCTTTTCTCTTTACAAACCCCCCAATTTCTCACTC
TCTAAATCTTTGCCTCTCTCTTTCAAGCCCATTTCTTCTGTTAAAACTCA
AAGAATCTCAACCAAAACCCTAGCTCTACAGCAACAGCAACGGCAACACG
ATGTTCCTTTGTCTTCGGCCCCTCAGACACCGGCCACCGCCATGCGTGGC
GCCGAAGCCGACGCCATGGGCCTCCTGCTCAAGGAAAGAATTGTTTTCTT
GGGTAATAACATTGACGATTTCGTTGCTGACGCCATCATCAGTCAGCTCC
TCTTATTGGACGCTCAGGACCCCACCAAAGATATCAGGCTGTTCGTCAAC
TCCCCCGGTGGCTCTCTCAGTGCCACAATGGCTATATATGATGTAGTGCA
GCTTGTGCGAGCAGATGTGTCCACGGTTGCGCTAGGCATGTCAGCATCAA
CTGCTTCGTTAATTCTTGGTGGTGGGACGAAAGGGAAGCGGTTTGCAATG
CCCAACACTCGGATAATGATTCATCAACCTATGGGAGGAGCTAGTGGGCA
AGTATTAGATGTGGAAATTCAAGCAAGAGAAATCATGCATAACAAGGATA
ATTTCACAAGAATTATATCTGGTTTTACTGGTCGTTCGTTTGAGCAAGTG
CAAAAGGATATTGATAGGGATCGGTACATGTCTCCGATTGAAGCAGTTGA
ATATGGGATTATTGATGGAGTTATTGATAGAGACAGTATTATTCCTCTGG
TTCCTGTGCCAGAAAAGGTCAAACCAGGCTTTGATTA
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