FC878082

Overview
NameFC878082
Unique NameFC878082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878082_ssr80 microsatellite FC878082_ssr80:80..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13701 contig Ccv1_Contig13701:33..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878082 vs. ExPASy Swiss-Prot
Match: RME6_CAEEL (Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans GN=rme-6 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.923e-13
Identity = 54/215 (25.12%), Postives = 95/215 (44.19%), Query Frame = 2
Query:  173 VRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEAIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRP--EHLDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 808
            V ++  F   F +  A  E   + ++   T +   +  +  W  AT   +  AM  +E+YV+  ++   F    + D   D+ +   I  +   + P  + L IP  L  EA W  A+ EL  ++     ++K+                 ++S    +  ADD  PVL+++IIKANP  L SN++F++ +    +     AYY+ N  SA  +I
Sbjct:  879 VTAVLKFYDEFKYLRAQDER-AEFLKNLLTFLRDRLMQNVDWNFATDTMMSRAMTTIERYVIFAVYDNAFYPNRDADHHRDKLLRGTIAKVSDVVTPVNDFLKIPEHLHGEAPWPSAQAELSMLDIYVTAQDKLNCVVRCCDVINNL---VALSSKNAVASADDLTPVLVFVIIKANPRALLSNVQFVETFAGDRIESGRDAYYWVNFKSAVEYI 1089          
BLAST of FC878082 vs. ExPASy Swiss-Prot
Match: RME6_DROME (Receptor-mediated endocytosis protein 6 homolog OS=Drosophila melanogaster GN=CG1657 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  320 IESAMEGLEKYVMTKLFSRT-FASTSEDVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 808
            +++A   +E+ ++ +++ +  F +   DV  D+ +S  I  LQ F+ P H  L I      EA W  A+++L  + A K PREK+                +S      +  ADD LPVLIY++I ANPP L S +++I  +  +  L  E  +Y+T   S   FI
Sbjct: 1545 VDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSS----GRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGK-KLEGEDEFYWTLFGSVVKFI 1705          
BLAST of FC878082 vs. ExPASy Swiss-Prot
Match: RME6_DROPS (Receptor-mediated endocytosis protein 6 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.144e-11
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  320 IESAMEGLEKYVMTKLFSRT-FASTSEDVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 808
            +++A E +E+ ++  ++ +  F +   DV  D  +S  I  LQ F+ P H  L I      EA W  A+++L  + A K PREK+                +       +  ADD LPVLIY++I ANPP L S +++I  +  +  L  E  +Y+T   S   FI
Sbjct: 1607 VDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSC----GRVPAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGR-KLDGENEFYWTLFGSVVKFI 1767          
The following BLAST results are available for this feature:
BLAST of FC878082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RME6_CAEEL7.923e-1325.12Receptor-mediated endocytosis protein 6 OS=Caenorh... [more]
RME6_DROME3.011e-1230.72Receptor-mediated endocytosis protein 6 homolog OS... [more]
RME6_DROPS1.144e-1130.72Receptor-mediated endocytosis protein 6 homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878082 ID=FC878082; Name=FC878082; organism=Citrus clementina; type=EST; length=896bp
CAAAATCACAATTGTTGCTCAAGCCCGCATTTACTTTCCTTTTCGTCAAT
TTCACCCAAAGCATTTCCAAATGGACACTTCGTCGTCGTCGTCGGCGTCC
GCCGCCGCTCCCTCAGCAGTGACCTTCTACGATTTTCTCGATCGCATGCG
CAACCCCGCTTCCCTCGATCTCGTTCGCTCCATCAAAAGCTTCATAGTAT
CATTTTCATTTAACAATGCGAACCCCGAAAATGATGGCAAAAGAGTTCAA
GAATTCTTCACGACAATGGAATCTGCTATTAAAGATCATCCCTTGTGGGC
TAATGCCACCATTGAAGCTATTGAGTCGGCTATGGAGGGTCTGGAGAAAT
ATGTCATGACAAAACTGTTTTCTCGGACATTTGCATCAACTTCTGAAGAT
GTGAAGATTGATCAAGAAATTTCAGAGAAGATATGTTTGCTGCAAACCTT
CTTGAGGCCTGAACACTTGGATATACCAACGTTTCTTCAAAATGAAGCTT
CGTGGCTGCTTGCCGAGAAAGAACTGCAGAAGATCAATGCTCTTAAAGCT
CCTCGTGAGAAGGTTCTTTGTATTATGAATTGTTGCAGGATCATCAACAA
TTTGCTTCTCAATGCATCTATTTCGGAAAATGTTGAGCTGGGAGGAGCTG
ATGACTTTCTTCCCGTCCTAATTTACATTATCATCAAGGCCAATCCTCCT
CAGTTGCATTCAAACATCAAATTCATTCAGTTGTACCGGAGGCAGGCAAT
GCTTGTTTCAGAAGCAGCTTATTATTTCACAAATCTTGTCTCAGCCAAGA
CATTTATTCTTGACTTAAATGCTAAATCACTTTCTATGGAGGAAACTGAG
TTTGAGAAAAGTATGCAAGCTGCAAGATTAGCCAACAAAGTTACTC
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