FC878084

Overview
NameFC878084
Unique NameFC878084
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878084 vs. ExPASy Swiss-Prot
Match: BAN_ARATH (Leucoanthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 47/159 (29.56%), Postives = 81/159 (50.94%), Query Frame = 1 
Query:  205 TKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFYSFEP---PSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFK 672
            +K  CV+  +G+ AS L++ LL  GY V+  + +    + I   L    E   LK+F+AD  D  S  ++  GC  +F+   P    S+    D +   ++ +   NVL++C ++ +V +V++TSS  AV  +N   + T    +E NW+DV    + K
Sbjct:   10 SKKACVIGGTGNLASILIKHLLQSGYKVNTTVRDPENEKKI-AHLRKLQELGDLKIFKADLTDEDSFESSFSGCEYIFHVATPINFKSEDPEKDMIKPAIQGVI--NVLKSCLKSKSVKRVIYTSSAAAVSINNL--SGTGIVMNEENWTDVEFLTEEK 163
The following BLAST results are available for this feature:
BLAST of FC878084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
BAN_ARATH9.252e-1129.56Leucoanthocyanidin reductase OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878084 ID=FC878084; Name=FC878084; organism=Citrus clementina; type=EST; length=738bp
ACAATAAATACCTGTACAACCCCCCCCTCCCTCCCTCCATCCTGTCTTCC
TCTTCAAACAAAATCTCAACTCTTCCTTCTCCTTCTTGAATTAATTGGAA
ATTACTTAAATCTCCCTCTCCTCCCAAAAATGGCGCCACCAGCATCATCC
GGTATTGAAGAAGAAATTGCAGTTGATCGAGACGGTTATGATTCTTCAAA
CGCAACAAAGACAGTATGCGTAATGGACGCCTCTGGCCACTTTGCCTCCG
CCCTCGTCCGCCGTCTCTTGCTTAGAGGCTACACCGTCCACGCTGCCCTC
CACAACCACGGAAAATTGCAGTGTATCGAAGGAGAGTTAATTAATTACAA
CGAGGAGAAGAAATTGAAAGTTTTCCAGGCAGACCCCTTTGATTACCACA
GCCTCGTGAATGCTTTAAAGGGTTGCTCCGGTCTGTTCTACTCCTTTGAG
CCTCCCTCCGACCACTCCACCTACGATGAATTGACGGCGGAAGTAGAGAC
AATGGCAGCTCACAACGTGCTGGAAGCGTGCGCACAGACAAATACAGTTG
ACAAAGTCGTCTTCACGTCTTCTCTAACCGCCGTCGTCTGGAGTAACCAC
CGCGACAATCCGACGTCGCACGACTTCGATGAGCGAAATTGGAGTGACGT
CAATTTGTGCAAGAAATTCAAGCTATGGCATGGTTTGTCAAAGACGCTGG
CGGAGAAGACAGCGTGNGCCCTAGCGATGGACCGAGGG
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