FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.205e-59
Identity = 119/225 (52.89%), Postives = 160/225 (71.11%), Query Frame = 3
Query:  150 NGELMGTKLNPNAKHRNEAGSKLVQKQVCMTLTADIAGESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +  L G KLNP  +       +  +++    ++     +S+     ++   +R+V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+  + V+E  L+L+GDHLYRMDY  F+Q HR++ ADIT++ LPMD++RA+ FGLMKI
Sbjct:   36 SSSLTGEKLNPTQEIIISNLPRGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HNVLE-FLVLAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKI 255          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.205e-59
Identity = 117/194 (60.31%), Postives = 148/194 (76.29%), Query Frame = 3
Query:  243 LTADIAGESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            LT     +S+     ++   +R+V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+  + V+E  LIL+GDHLYRMDY  F+Q HR+S ADIT++ LPMD++RA+ FGLMKI
Sbjct:   55 LTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HNVLE-YLILAGDHLYRMDYEKFIQAHRESDADITVAALPMDEKRATAFGLMKI 243          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.880e-59
Identity = 116/202 (57.43%), Postives = 151/202 (74.75%), Query Frame = 3
Query:  219 VQKQVCMTLTADIAGESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +  +  + ++     +SK     ++   +R+V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+  + V+E  LIL+GDHLYRMDY  FVQ HR++ ADIT++ LPMD++RA+ FGLMKI
Sbjct:   40 ISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HNVLE-YLILAGDHLYRMDYERFVQAHRETDADITVAALPMDEKRATAFGLMKI 236          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.416e-59
Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCIN+ I K+Y+LTQ+NSASLNRHL R YN+     F DG VEVLAA QT       WFQGTADAVRQ+ WLF++     +++ LILSGDHLYRMDY DFV+ HR++GADIT+S +P+D++RAS FGLMKI
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINAEILKIYVLTQFNSASLNRHLTRTYNF---TGFHDGFVEVLAAQQT--TENPSWFQGTADAVRQYGWLFDE---WDVDEYLILSGDHLYRMDYSDFVKRHRETGADITLSVVPIDEKRASSFGLMKI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.429e-58
Identity = 115/187 (61.50%), Postives = 145/187 (77.54%), Query Frame = 3
Query:  264 ESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +SK     ++   +R+V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+  + V+E  L+L+GDHLYRMDY  F+Q HR+S ADIT++ LPMD+ RA+ FGLMKI
Sbjct:   66 DSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HNVLE-YLVLAGDHLYRMDYERFIQAHRESDADITVAALPMDEARATAFGLMKI 247          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 224.942 bits (572), Expect = 4.159e-58
Identity = 111/187 (59.36%), Postives = 143/187 (76.47%), Query Frame = 3
Query:  264 ESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +SK     ++   + +V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+     + + LIL+GDHLYRMDY  F+Q HR++ +DIT++ LPMD++RA+ FGLMKI
Sbjct:   68 DSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPD--NPNWFQGTADAVRQYLWLFEEHN---VMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKI 249          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.159e-58
Identity = 112/187 (59.89%), Postives = 142/187 (75.94%), Query Frame = 3
Query:  264 ESKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +SK     ++   + +V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+     + + LIL+GDHLYRMDY  F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI
Sbjct:   67 DSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPD--WFQGTADAVRQYLWLFEEHN---VMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMKI 248          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.432e-58
Identity = 112/172 (65.12%), Postives = 139/172 (80.81%), Query Frame = 3
Query:  309 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+  + V+E  LIL+GDHLYRMDY  F+Q HR++ ADIT++ LPMD++RA+ FGLMKI
Sbjct:   89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HNVLE-YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKI 255          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.064e-57
Identity = 114/186 (61.29%), Postives = 140/186 (75.27%), Query Frame = 3
Query:  267 SKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            SK  DL     D+  V  +ILGGGAGTRLYPLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+ TQ+NSASLNRHL+RAY    G    +G VEVLAA Q+P      WFQGTADAVRQ+ WLFE+     + + LIL+GDHLYRMDY  F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI
Sbjct:   30 SKHADLNPHVDDS--VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVRTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPD--WFQGTADAVRQYLWLFEEHN---VMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMKI 208          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.064e-57
Identity = 112/173 (64.74%), Postives = 137/173 (79.19%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINS I K+Y+LTQ+NSASLNRH++RAYN+     F +G VEVLAA QT  +    WFQGTADAVRQ+ WLF   R   +++ LILSGDHLYRMDY  FV+ HR++ ADIT+S +P+DDR+A + GLMKI
Sbjct:   12 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIVKIYVLTQFNSASLNRHISRAYNFSG---FQEGFVEVLAAQQT--KDNPDWFQGTADAVRQYLWLF---REWDVDEYLILSGDHLYRMDYAQFVKRHRETNADITLSVVPVDDRKAPELGLMKI 176          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGS_BRANA2.205e-5952.89Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA2.205e-5960.31Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BETVU2.880e-5957.43Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_CYAA56.416e-5965.90Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGS2_VICFA1.429e-5861.50Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ4.159e-5859.36Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU4.159e-5859.89Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH5.432e-5865.12Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT2.064e-5761.29Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_SYNY32.064e-5764.74Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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