FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL1_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Zea mays GN=SH2 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.696e-57
Identity = 118/241 (48.96%), Postives = 165/241 (68.46%), Query Frame = 3
Query:  138 VKSCNGELMGT--KLNPNAKHRNEA------GSKLVQKQVCMTLTADIAGESKLRDLEMEKR---DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            ++SC G+ +    KL+   + + +A      G ++     C+ LT+D   E+     +  ++   DA  V+A+ILGGG G++L+PLT  RA PAVP+GG YRLID+PMSNC NSGINK+++++Q+NS SLNRH+ R Y  G G+ F DG V+VLAATQ P E    WFQGTAD++R+F W+ ED   +K I++++ILSGD LYRM+YM+ VQ H +  ADITISC P+D+ RAS  GL+KI
Sbjct:   16 IRSCEGDGIDRLEKLSIGGRKQEKALRNRCFGGRVAATTQCI-LTSDACPETLHSQTQSSRKNYADANRVSAIILGGGTGSQLFPLTSTRATPAVPVGGCYRLIDIPMSNCFNSGINKIFVMSQFNSTSLNRHIHRTYLEG-GINFADGSVQVLAATQMPEEPA-GWFQGTADSIRKFIWVLEDYYSHKSIDNIVILSGDQLYRMNYMELVQKHVEDDADITISCAPVDESRASKNGLVKI 253          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.521e-57
Identity = 111/173 (64.16%), Postives = 136/173 (78.61%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINS I K+Y+LTQ+NSASLNRHL+R YN+     F D  VEVLAA QT       WFQGTADAVRQ+ WL E+     +++ LILSGDHLYRMDY +++Q HR++ ADIT+S +P+D++RAS FGLMKI
Sbjct:    2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEITKIYVLTQFNSASLNRHLSRTYNF---TGFNDEFVEVLAAQQT--AENPSWFQGTADAVRQYLWLMEE---WDVDEYLILSGDHLYRMDYREYIQRHRETKADITLSVVPIDEKRASSFGLMKI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SYNPW (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain WH7803) GN=glgC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.338e-56
Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMK 821
            + V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINS INK+Y+LTQ+NSASLNRHL++ YN  +G  FG G VEVLAA QTP      WF+GTADAVR++ WLF++     +++ LILSGD LYRMDY  F+ +HR +GAD+T++ LP+D ++A  FGLM+
Sbjct:    2 KRVLAIILGGGAGTRLYPLTKMRAKPAVPLAGKYRLIDIPISNCINSNINKMYVLTQFNSASLNRHLSQTYNLSAG--FGQGFVEVLAAQQTP--ESPSWFEGTADAVRKYQWLFQE---WDVDEYLILSGDQLYRMDYSLFINHHRSTGADLTVAALPVDAKQAEAFGLMR 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.893e-56
Identity = 111/173 (64.16%), Postives = 132/173 (76.30%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + V A+ILGGGAGTRLYPLTKQRAKPAVP+ G YRLID+P+SNCINS I  VY+LTQ+NSASLNRH+AR YN+     F DG VEVLAA QTP      WFQGTADAVRQ+ WL  D     ++  LILSGDHLYRMDY  FV  HR + ADIT+S LP++++ AS FGL+++
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINSEITHVYVLTQFNSASLNRHIARTYNFSG---FSDGFVEVLAAQQTP--ENPDWFQGTADAVRQYLWLLSDWE---VDYYLILSGDHLYRMDYRLFVNRHRDTNADITLSVLPVEEQVASSFGLLQV 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.479e-55
Identity = 108/173 (62.43%), Postives = 134/173 (77.46%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + V  +ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINS I+K+YILTQ+NSASLNRH++R YN+     F +G  EVLAA QT  +    WFQGTADAVRQ+ WL ED     +++ +ILSGDHLYRMDY +F+Q HR +GADIT+S +P+ ++ A  FGLMKI
Sbjct:    2 KRVLGIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIHKIYILTQFNSASLNRHISRTYNF---TGFTEGFTEVLAAQQT--KENPDWFQGTADAVRQYSWLLED---WDVDEYIILSGDHLYRMDYREFIQRHRDTGADITLSVVPVGEKVAPAFGLMKI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBPA (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio parahaemolyticus GN=glgC2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.947e-35
Identity = 76/169 (44.97%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            AVIL GG G+RL PLT  RAKPAVP GG YR+ID  ++NC+NSG+ K+ +LTQY S SL +HL   ++      F     E + A       G  W++GTADA+    WL    RN   + V++LSGDH+YRMDY   ++ H++ GA +T++C+ +  + AS FG+M I
Sbjct:    6 AVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLNSGLRKILVLTQYKSHSLQKHLRDGWS-----IFNPELGEYITAVPPQMRKGGAWYEGTADAIYHNLWLLS--RNDA-KYVVVLSGDHIYRMDYAAMLEEHKEKGAKLTVACMDVPVKDASAFGVMGI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.461e-35
Identity = 79/170 (46.47%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  321 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF--EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            V+L GGAG RLYPLT+ RAKPAV  GG YR+ID+ +SNCINSG+ +VYILTQY + SLNRH+   ++   G   G+  +E+L   +   E    W+ GTADAV Q  +    E PR      VLILSGDH+Y+M+Y   ++ H+ SGAD+T++ + +D      FG++ +
Sbjct:    7 VLLAGGAGERLYPLTRDRAKPAVNFGGIYRIIDITLSNCINSGLRRVYILTQYKALSLNRHIREGWSGIVGNELGE-FIEILPPMKRVSE---NWYMGTADAVYQNIYSIGSEQPRY-----VLILSGDHIYKMNYDLMMRQHKDSGADVTLATILIDPSETRHFGVVDV 167          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_THICR (Glucose-1-phosphate adenylyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.880e-34
Identity = 80/173 (46.24%), Postives = 109/173 (63.01%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R   A++L GG G+RL  LTK RAKPAVP GG YR+ID  +SNC+NSGI K+ +LTQY S SL RH+ RA+++      G+  VE+L A Q      K W++GTADA+ Q     +  R    + VL+L GDH+Y MDY   +  H +SGAD+TI C+ +    A+ FG+M +
Sbjct:   15 RKTLALVLAGGEGSRLKDLTKWRAKPAVPFGGKYRIIDFVLSNCVNSGIRKIGVLTQYKSHSLIRHVQRAWSF-MRYEVGE-FVELLPAQQ---RVDKGWYKGTADALYQ---NLDIMRRHTPDYVLVLGGDHIYSMDYSKMLYEHAESGADVTIGCIEVPRMEATGFGVMSV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.188e-34
Identity = 82/174 (47.13%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RLY LT  RAKPA+  GG YR+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   +    W+QGTADAV Q     +  R ++ + V+ILSGDH+YRMDY   +  H +SGA++T+ CL    D  A  FG+M++
Sbjct:   12 RDTYALILAGGRGSRLYELTDWRAKPALYFGGKYRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVTRGWGHFK-KELGES-VEILPASQ---QTSGNWYQGTADAVFQ---NIDIIRQEIPKYVMILSGDHIYRMDYAGLLAAHAESGAEMTVCCLETPIDEAAGAFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_BURXL (Glucose-1-phosphate adenylyltransferase OS=Burkholderia xenovorans (strain LB400) GN=glgC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.330e-34
Identity = 79/186 (42.47%), Postives = 116/186 (62.37%), Query Frame = 3
Query:  267 SKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            ++L DL+      RT  A++L GG GTRL PLT +R KPAV  GG YR+ID  +SNC+NSGI ++ ++TQY + SL RHL R +++  G  FG+  +++  A Q     G  W++GTADAV Q   +    R K    V++L+GDH+Y+MDY   + +H +SGAD T+ C+ +    A  FG+M +
Sbjct:    5 ARLNDLQ------RTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHLQRGWSFLRG-EFGE-FIDLWPAQQR--VEGAHWYRGTADAVFQNLDIIRSIRPKY---VVVLAGDHIYKMDYTRMIADHAESGADCTVGCIEVPRMDAVAFGVMHV 177          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGL1_MAIZE2.696e-5748.96Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_CYAP73.521e-5764.16Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_SYNPW1.338e-5662.21Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP43.893e-5664.16Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_SYNP21.479e-5562.43Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC2_VIBPA4.947e-3544.97Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC_ACIBL6.461e-3546.47Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_THICR1.880e-3446.24Glucose-1-phosphate adenylyltransferase OS=Thiomic... [more]
GLGC_SHEFN4.188e-3447.13Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_BURXL9.330e-3442.47Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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