FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRCO (Glucose-1-phosphate adenylyltransferase OS=Streptomyces coelicolor GN=glgC PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-24
Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  321 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            ++L GG G RL PLT  RAKPAV  GG YRL+D  +SN +N  I ++ +LTQY S SL+RH+   +   S    G+    V A  +     G RWF G+ADA+ Q   L  D +    E V +   DH+YRMD    +  H +SGA +T++ + +    +  FG++
Sbjct:    4 IVLAGGEGKRLMPLTADRAKPAVTFGGTYRLVDFVLSNLVNGDILRICVLTQYKSHSLDRHITTTWRMSS--LLGNYVTPVPAQQR----LGPRWFLGSADAILQSLNLVHDEQP---EYVAVFGADHVYRMDPRQMLAQHIESGAGVTVAGIRVPRAESPSFGVI 160          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLE (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae GN=glgC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-24
Identity = 66/174 (37.93%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF--EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFG 812
            R+   V  ++L GG G RLYPLT  RAKPAVP GGAYRL+D  +SN +N+   ++ +LTQY S SL+RH+++ +   SG+       E +         G  W+ G+ADA+ Q   L   EDP     + +++   DH+YRMD    ++ H  SGA  T++ + +    A+ FG
Sbjct:    2 REVPQVLGIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLVDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNWRL-SGL-----AGEYITPVPAQQRFGPHWYTGSADAIYQSLNLIYDEDP-----DYLVVFGADHVYRMDPEQMLRFHIGSGAGATVAGIRVPRSDATAFG 164          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLB (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae (strain Br4923) GN=glgC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-24
Identity = 66/174 (37.93%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF--EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFG 812
            R+   V  ++L GG G RLYPLT  RAKPAVP GGAYRL+D  +SN +N+   ++ +LTQY S SL+RH+++ +   SG+       E +         G  W+ G+ADA+ Q   L   EDP     + +++   DH+YRMD    ++ H  SGA  T++ + +    A+ FG
Sbjct:    2 REVPQVLGIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLVDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNWRL-SGL-----AGEYITPVPAQQRFGPHWYTGSADAIYQSLNLIYDEDP-----DYLVVFGADHVYRMDPEQMLRFHIGSGAGATVAGIRVPRSDATAFG 164          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_DESHY (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.008e-24
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL--FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A++L GG G+RL  LT+   KPAV   G YR+ID  +SNC NS I+ V +LTQY   +LN ++    N GS       +G + +L      GEA   W++GTA+A+ Q      F +P     E +LILSGDH+Y+MDY + +  H+Q  A++T+S + +    AS FG+M
Sbjct:    8 AMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSLSNCSNSNIDTVGVLTQYKPFALNTYI----NMGSAWDLNCLNGGIHIL--PPFVGEAQGSWYKGTANAIYQNMDFINFYNP-----EYILILSGDHIYQMDYYEMLSYHKQKHAEVTLSAIAVPWEEASRFGVM 167          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.929e-24
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL--FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A++L GG G+RL  LT+   KPAV   G YR+ID  +SNC NS I+ V +LTQY   +LN ++    N GS       +G + +L      GEA   W++GTA+A+ Q      F +P     E +LILSGDH+Y+MDY + +  H+Q  A++T+S + +    AS FG+M
Sbjct:    8 AMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSLSNCSNSNIDTVGVLTQYKPFALNTYI----NMGSAWDLNCLNGGIHIL--PPFVGEAQGSWYKGTANAIYQNMDFINFYNP-----EYILILSGDHIYQMDYYEMLSCHKQKHAEVTLSAIAVPWEEASRFGVM 167          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_CLOTH (Glucose-1-phosphate adenylyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glgC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.929e-24
Identity = 69/173 (39.88%), Postives = 104/173 (60.12%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFE-DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            + + A++L GG G+RL  LTK  AKPAV  GG YR+ID  +SNC+NS I+ V +LTQY    LN H+     +       +G V +L +     E G+ W++GTA+AV Q  H++ +  P+      V+ILSGDH+Y+M+Y   +  H+++ AD TIS + +    AS +G+M
Sbjct:    4 KEIIALLLAGGQGSRLGVLTKNIAKPAVLYGGKYRIIDFSLSNCVNSDIDTVGVLTQYQPLELNAHIGIGKPWDMDRI--NGGVTIL-SPYLKAEIGE-WYKGTANAVFQNIHYVDKYSPKY-----VIILSGDHVYKMNYSQMLDFHKENNADATISVINVPWEEASRYGIM 167          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_ACIAC (Glucose-1-phosphate adenylyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.131e-24
Identity = 57/172 (33.14%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMK 821
            + V A+++ GG G+RL+PLT +R KPAVP  G +R++D  +SN +NS I  +Y+L QY S SL  H+ +++     +         +         G  WFQGTAD+V Q   L E  +  +   V +   DH+YRMD    +  H ++ A ++++ LP+     + FG+++
Sbjct:    5 KNVLAIVMAGGEGSRLHPLTAERCKPAVPFNGKHRIVDFVLSNLVNSEIYSIYLLVQYKSQSLIEHIRQSWTMTRFIP-----QHFVTVVPPQMRNGPEWFQGTADSVYQNIHLIESFKPDI---VAVFGADHIYRMDVRQMIDFHVKNDAHVSVATLPVKLADCNQFGIVE 168          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGL1_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.334e-15
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 3
Query:  681 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            VLILSGDHLYRMDYMDFVQ+HRQ  A I+I CLP+D  RASDFGLMKI
Sbjct:    2 VLILSGDHLYRMDYMDFVQSHRQRDAGISICCLPIDGSRASDFGLMKI 49          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_STRCO1.764e-2438.55Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_MYCLE1.764e-2437.93Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCLB1.764e-2437.93Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_DESHY3.008e-2440.35Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_DESHD3.929e-2440.35Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_CLOTH3.929e-2439.88Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_ACIAC5.131e-2433.14Glucose-1-phosphate adenylyltransferase OS=Acidovo... [more]
GLGL1_WHEAT3.334e-1581.25Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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