FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11745 contig Ccv1_Contig11745:43..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBVY (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio vulnificus (strain YJ016) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.219e-33
Identity = 71/171 (41.52%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  312 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +  VIL GG G+RL PLT  RAKPAVP GG YR+ID  ++NC++SG+ K+ +LTQY S SL +HL   ++      F     E + +       G +W++GTADA+    WL E    K    V++LSGDH+YRMDY   ++ H  + A +T++C+ ++ + A  FG+M I
Sbjct:    4 ILTVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRKILVLTQYKSHSLQKHLRDGWS-----IFNPELGEYITSVPPQMRKGGKWYEGTADAIYHNLWLLERSEAKY---VMVLSGDHIYRMDYAPMLEEHIANNAALTVACMDVNCKEAKAFGVMGI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBVU (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio vulnificus GN=glgC2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.219e-33
Identity = 71/171 (41.52%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  312 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +  VIL GG G+RL PLT  RAKPAVP GG YR+ID  ++NC++SG+ K+ +LTQY S SL +HL   ++      F     E + +       G +W++GTADA+    WL E    K    V++LSGDH+YRMDY   ++ H  + A +T++C+ ++ + A  FG+M I
Sbjct:    4 ILTVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRKILVLTQYKSHSLQKHLRDGWS-----IFNPELGEYITSVPPQMRKGGKWYEGTADAIYHNLWLLERSEAKY---VMVLSGDHIYRMDYAPMLEEHIANNAALTVACMDVNCKEAKAFGVMGI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_ROSDO (Glucose-1-phosphate adenylyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.591e-33
Identity = 74/178 (41.57%), Postives = 115/178 (64.61%), Query Frame = 3
Query:  291 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            E+R A+   A +L GG G+RLY LT +RAKPA+  GG  R+ID P+SN +NSGI ++ + TQY + SL RHL R +++       +  +++L A+Q   +  + W++GTADAV Q   + E    K I   +IL+GDH+Y+ DY + +++H +SGAD+T+ C+ +    AS FG+MK+
Sbjct:    5 EQRLAQQTMAFVLAGGRGSRLYELTDRRAKPAMYFGGKSRIIDFPLSNAVNSGIRRIGVATQYKAHSLIRHLQRGWSFFRAER--NESLDILPASQQMND--ENWYKGTADAVAQNKDIIEGYGPKYI---IILAGDHIYKQDYAEMIRHHVESGADVTVGCIEVPRMEASGFGVMKV 175          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_ALTMD (Glucose-1-phosphate adenylyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 79/174 (45.40%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNC+NSGI ++ ++TQY S SL RHL R + +      G+  VE+L A+Q   ++   W++GTADAV Q   +  D   K    V+ILSGDH+YRMDY D +  H++SGA +T+SC+ +  +  A  FG+M +
Sbjct:   14 RDTYALILAGGKGSRLHELTTWRAKPALYFGGKFRIIDFPLSNCVNSGIRRIGVVTQYKSHSLIRHLVRGWGHFK-KELGES-VEILPASQRFSDS---WYEGTADAVFQNIDIIRDELPKY---VMILSGDHIYRMDYGDMLAKHKESGAKMTVSCMSVPLEEAAGAFGVMSV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB9 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS195) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB8 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS185) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB5 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB2 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS223) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +     A  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEAAGSFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_BURPP (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 78/186 (41.94%), Postives = 115/186 (61.83%), Query Frame = 3
Query:  267 SKLRDLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            ++L DL+      RT  A++L GG GTRL PLT +R KPAV  GG YR+ID  +SNC+NSGI ++ ++TQY + SL RHL R +++  G   G+  +++  A Q     G  W++GTADAV Q   +    R K    V++L+GDH+Y+MDY   + +H +SGAD T+ C+ +    A  FG+M +
Sbjct:    5 ARLNDLQ------RTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHLQRGWSFLRG-EMGE-FIDLWPAQQR--VEGAHWYRGTADAVFQNLDIIRSIRPKY---VVVLAGDHIYKMDYTRMIADHAESGADCTVGCIEVPRMEAVAFGVMHV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_THIDA (Glucose-1-phosphate adenylyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 81/173 (46.82%), Postives = 108/173 (62.43%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R   A++L GG G+RL  LT  RAKPAVPIGG YR+ID P+SNC+NSGI ++ +LTQY S SL RHL RA  +G   T     VE+L A Q   +  K W+QGTADA+ Q     +  +    E VL+L GDH+Y MDY   +  H Q+GAD+T+  + +    A+ FG+M +
Sbjct:   26 RKTLALVLAGGEGSRLKDLTAWRAKPAVPIGGKYRIIDFPLSNCVNSGIRRIGVLTQYKSHSLIRHLQRA--WGLMRTEVGEFVEILPAQQRTHK--KEWYQGTADALFQ---NLDIMQRHHPEYVLVLGGDHVYTMDYTQMLLYHVQTGADVTVGSVEVPVAEAAAFGVMSV 191          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC2_VIBVY1.219e-3341.52Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC2_VIBVU1.219e-3341.52Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC_ROSDO1.591e-3341.57Glucose-1-phosphate adenylyltransferase OS=Roseoba... [more]
GLGC_ALTMD2.078e-3345.40Glucose-1-phosphate adenylyltransferase OS=Alterom... [more]
GLGC_SHEB92.715e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB82.715e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB52.715e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB22.715e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_BURPP2.715e-3341.94Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_THIDA3.545e-3346.82Glucose-1-phosphate adenylyltransferase OS=Thiobac... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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