FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHESR (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 81/174 (46.55%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHESM (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 81/174 (46.55%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHESA (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=glgC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 81/174 (46.55%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEON (Glucose-1-phosphate adenylyltransferase OS=Shewanella oneidensis GN=glgC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.545e-33
Identity = 81/174 (46.55%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG+M++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRYSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC2_PSEA6 (Glucose-1-phosphate adenylyltransferase 2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.630e-33
Identity = 78/174 (44.83%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSGI ++ ++TQY S SL RHL R + +      G+  VE+L A+Q    +   W++GTADAV Q     +  R+++ + V+ILSGDH+Y MDY + + +H +SGA +T+SC+P+  +  A  FG+M +
Sbjct:   14 RDTYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIKRIGVVTQYKSHSLIRHLVRGWGH-FRKELGES-VEILPASQ---RSSGNWYEGTADAVFQ---NIDIIRDEIPKYVMILSGDHIYSMDYANILAHHVESGAKMTVSCMPVPIEEAAGAFGVMSV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBCH (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio cholerae GN=glgC2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.898e-33
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            AVIL GG G+RL PLT  RAKPAVP GG YR+ID  ++NC++SG+ ++ +LTQY S SL++HL   ++      F     E +         G +W++GTADA+    WL      K    V++LSGDH+YRMDY   ++ H    A +TI+C+ +    AS FG+M I
Sbjct:    6 AVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKSHSLHKHLRNGWS-----IFNPELGEFITVVPPQMRKGGKWYEGTADALFHNMWLLARSDAKY---VVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAI 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.032e-32
Identity = 77/174 (44.25%), Postives = 105/174 (60.34%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAY-NYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R    VIL GG G+RL PLT+ RAKPAVPIGGAYR+ID  +SNC+NS + ++ +LTQY + SL+RH+  A+ NY     F     E +            W+QGTADAV Q  +  E    +  E V+IL+GDHLY+M+Y   V  H + GAD+T+  L +    A  FG+M++
Sbjct:   23 RQTVTVILAGGRGSRLEPLTRDRAKPAVPIGGAYRIIDFVLSNCLNSDMRRLLLLTQYKAQSLDRHINVAWRNY-----FCRELGEFIDVVPPQQRIDDNWYQGTADAVYQNIYAIE---REAPEYVVILAGDHLYKMNYESMVNFHHRKGADVTVGALRVSREEARQFGVMQV 188          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_BIFA0 (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glgC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.032e-32
Identity = 74/179 (41.34%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  288 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            M K++ + + +++L GG GTRL PLT+ RAKPAVP GG YRLID P+SN +NSG ++V +LTQY S SL+RH+++ + +    T     V  + A Q     GK W+ G+ADAV Q   + ED +  +   V+I+  DH+YRMD+   V  H +SGA+ T++ +     ++S FG++++
Sbjct:    1 MAKKNPK-ILSIVLAGGEGTRLMPLTRDRAKPAVPFGGVYRLIDFPLSNLVNSGYSQVIVLTQYKSHSLDRHISQLWRFS---TLLGNYVSPVPAQQ---RLGKHWYLGSADAVYQTINIIEDVQPDI---VVIVGADHVYRMDFEQMVNQHIESGAEFTVAGIRQPIEQSSQFGVIEV 169          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHESW (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.760e-32
Identity = 79/174 (45.40%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSG+ +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG++++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGVRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRFSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGILAAHAESGADMTVSCLEVPIAEAAGAFGVIEV 177          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEPC (Glucose-1-phosphate adenylyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=glgC PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.760e-32
Identity = 79/174 (45.40%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASD-FGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNCINSG+ +V ++TQY S SL RH+ R + +      G+  VE+L A+Q   E    W+QGTADAV Q     +  R+++ + V++LSGDH+YRMDY   +  H +SGAD+T+SCL +    A+  FG++++
Sbjct:   12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGVRRVGVVTQYKSHSLIRHVMRGWGHFK-KELGES-VEILPASQRFSE---NWYQGTADAVFQ---NIDIIRHELPKYVMVLSGDHVYRMDYAGILAAHAESGADMTVSCLEVPIAEAAGAFGVIEV 177          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_SHESR3.545e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESM3.545e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESA3.545e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEON3.545e-3346.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC2_PSEA64.630e-3344.83Glucose-1-phosphate adenylyltransferase 2 OS=Pseud... [more]
GLGC2_VIBCH7.898e-3342.60Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC_RHOBA1.032e-3244.25Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_BIFA01.032e-3241.34Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_SHESW1.760e-3245.40Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEPC1.760e-3245.40Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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