FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SHEAM (Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glgC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.298e-32
Identity = 80/175 (45.71%), Postives = 115/175 (65.71%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC--LPMDDRRASDFGLMKI 824
            R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNC+NSGI ++ ++TQY S SL RH+ R + +      G+  VE+L A+Q   E+   W+QGTADAV Q     +  R+++   V+ILSGDH+YRMDY   +  H QSGAD+T+ C  +P+ +  A  FG+M++
Sbjct:   14 RETYALILAGGRGSRLFELTDWRAKPALYFGGKFRVIDFPLSNCVNSGIRRIGVVTQYQSHSLIRHVMRGWGHFKR-ELGES-VEILPASQRYSES---WYQGTADAVFQ---NIDIIRHELPRYVMILSGDHVYRMDYAGMLAAHAQSGADMTVCCQEVPVAE-AAGSFGVMEV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.298e-32
Identity = 77/177 (43.50%), Postives = 113/177 (63.84%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R  R   A++L GG G+RL+ LT  RAKPA+  GG +R+ID P+SNC+NSGI ++ ILTQY + SL RH+ R ++      FG+  VE+L A+Q        W+QGTADA+ Q   + +    K I   L+LSGDH+Y+MDY   + +H ++GAD+T+SC+ +  +  A  FG+M +
Sbjct:   11 RLTRDTVALVLAGGRGSRLHELTDWRAKPALHFGGKFRIIDFPLSNCVNSGIRRIGILTQYKAHSLIRHVIRGWS-SFKKEFGE-YVEILPASQ---RYSPNWYQGTADAIYQNLDILQAEAPKYI---LVLSGDHVYQMDYGAIIAHHVETGADLTVSCIEVPIEEAAGSFGVMTV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_THERP (Glucose-1-phosphate adenylyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.001e-32
Identity = 78/169 (46.15%), Postives = 103/169 (60.95%), Query Frame = 3
Query:  312 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            VA +IL GG G RL  L++QRAKPAVP GG YR+ID  +SNC+NSG+  V +LTQY   SLN H+     +        G   V+      G +   W++GTADAV  +H LF   R +   DVLIL+GDH+Y MDY   +  HR+  AD+TI+  P+D R AS FG++
Sbjct:    4 VAVMILAGGQGERLSILSRQRAKPAVPFGGKYRIIDFALSNCVNSGLYDVAVLTQYRPHSLNEHIGHGRPWDLDRERNGG---VVILQPYLGRSTSGWYRGTADAV--YHNLFYITR-RPYRDVLILAGDHVYAMDYRPMIAQHRERCADVTIAVQPVDWREASRFGVV 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_NITOC (Glucose-1-phosphate adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.001e-32
Identity = 76/176 (43.18%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R  R   A+IL GG G+RL  LT  RAKPAVPIGG +R+ID P+SNC+NSG+ ++ +LTQY + SL RH+ + + +  G  +    VE++ A+Q   ++   W+ GTADAV Q     +  R+   E VLIL+GDH+Y+MDY D +  H +  AD+T+ C+ +  + A  FG+M +
Sbjct:   12 RLTRDTLALILAGGRGSRLKNLTAWRAKPAVPIGGKFRIIDFPLSNCVNSGVRRICVLTQYKAHSLVRHIQQGWGFMRG--YLGEFVELMPASQRIEDS---WYAGTADAVYQ---NLDIVRSHNPEYVLILAGDHVYKMDYGDMLAYHVEREADMTVGCIHVPLKEAKAFGVMSV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_TERTT (Glucose-1-phosphate adenylyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=glgC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.119e-32
Identity = 78/177 (44.07%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD-DRRASDFGLMKI 824
            R  R   A+IL GG G+RL+ LT  RAKPA+  GG +R+ID P+SNC+NSGI +V +LTQY + SL RHL R +++      G+  VE+L A+Q        W+QGTADA+ Q   +  D   K    V++LSGDH+Y+MDY   +  H ++GAD+T+SC+ +  +  A  FG+M +
Sbjct:   11 RLTRDTMALILAGGRGSRLHELTDWRAKPALHFGGKFRIIDFPLSNCVNSGIRRVGVLTQYKAHSLIRHLVRGWSHFK-KELGE-YVEILPASQ---RYSPNWYQGTADAIYQNLDIILDEAPKY---VMVLSGDHVYQMDYGSMLAYHVETGADLTVSCIEVPIEEAAGAFGVMTV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLO (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum GN=glgC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.119e-32
Identity = 70/171 (40.94%), Postives = 108/171 (63.16%), Query Frame = 3
Query:  312 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + +++L GG GTRL PLT+ RAKPAVP GG YRLID P+SN +NSG  +V +LTQY S SL+RH+++ + +   +      V  + A Q     GK W+ G+ADA+ Q   + ED +  +   V+I+  DH+YRMD+   VQ H +SGA+ T++ +      ++ FG++++
Sbjct:    7 ILSIVLAGGEGTRLMPLTRDRAKPAVPFGGVYRLIDFPLSNLVNSGYRQVVVLTQYKSHSLDRHISQVWRFSPLL---GSYVSPVPAQQ---RLGKHWYLGSADAIYQTINIIEDVQPDI---VVIVGADHVYRMDFEQMVQQHIESGAEFTVAGIRQPIEESNQFGVIEV 168          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLI (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=glgC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.119e-32
Identity = 70/171 (40.94%), Postives = 108/171 (63.16%), Query Frame = 3
Query:  312 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + +++L GG GTRL PLT+ RAKPAVP GG YRLID P+SN +NSG  +V +LTQY S SL+RH+++ + +   +      V  + A Q     GK W+ G+ADA+ Q   + ED +  +   V+I+  DH+YRMD+   VQ H +SGA+ T++ +      ++ FG++++
Sbjct:    7 ILSIVLAGGEGTRLMPLTRDRAKPAVPFGGVYRLIDFPLSNLVNSGYRQVVVLTQYKSHSLDRHISQVWRFSPLL---GSYVSPVPAQQ---RLGKHWYLGSADAIYQTINIIEDVQPDI---VVIVGADHVYRMDFEQMVQQHIESGAEFTVAGIRQPIEESNQFGVIEV 168          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLD (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum (strain DJO10A) GN=glgC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.119e-32
Identity = 70/171 (40.94%), Postives = 108/171 (63.16%), Query Frame = 3
Query:  312 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            + +++L GG GTRL PLT+ RAKPAVP GG YRLID P+SN +NSG  +V +LTQY S SL+RH+++ + +   +      V  + A Q     GK W+ G+ADA+ Q   + ED +  +   V+I+  DH+YRMD+   VQ H +SGA+ T++ +      ++ FG++++
Sbjct:    7 ILSIVLAGGEGTRLMPLTRDRAKPAVPFGGVYRLIDFPLSNLVNSGYRQVVVLTQYKSHSLDRHISQVWRFSPLL---GSYVSPVPAQQ---RLGKHWYLGSADAIYQTINIIEDVQPDI---VVIVGADHVYRMDFEQMVQQHIESGAEFTVAGIRQPIEESNQFGVIEV 168          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC2_ALHEH (Glucose-1-phosphate adenylyltransferase 2 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.119e-32
Identity = 82/177 (46.33%), Postives = 109/177 (61.58%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R  R    +IL GG G+RL  LT  RAKPAVP GG +R+ID  +SNCINSGI ++ +LTQY + SL RHL   +    G  FG+  VE+L A Q T G     W++GTADAV Q     +  R    + VLIL+GDH+Y+MDY   +  H ++GAD+T+ CL +    AS FG+M +
Sbjct:   12 RLTRNTLVLILAGGRGSRLMDLTTWRAKPAVPFGGKFRIIDFTLSNCINSGIRRIGVLTQYKAHSLIRHLRLGWGSLRG-DFGE-FVEILPAQQRTEGS----WYRGTADAVYQ---SLDIVRMHDPDYVLILAGDHVYKMDYGPMLARHVETGADVTVGCLEVPVEEASAFGVMAV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRMU (Glucose-1-phosphate adenylyltransferase OS=Streptococcus mutans GN=glgC PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.686e-32
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGIN V I+TQY   +LN H+    ++G  G+  G   ++  +AT+     G RWFQGT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q H+ + A +T++ + +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGINNVGIITQYQPLALNSHIGNGSSWGLDGINSGATILQPYSATE-----GNRWFQGTSHAIYQ-NIDYIDSINP--EYVLILSGDHIYKMDYDDMLQTHKDNMASLTVAVIDVPLKEASRFGIM 166          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_SHEAM2.298e-3245.71Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SACD22.298e-3243.50Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_THERP3.001e-3246.15Glucose-1-phosphate adenylyltransferase OS=Thermom... [more]
GLGC_NITOC3.001e-3243.18Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_TERTT5.119e-3244.07Glucose-1-phosphate adenylyltransferase OS=Teredin... [more]
GLGC_BIFLO5.119e-3240.94Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_BIFLI5.119e-3240.94Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_BIFLD5.119e-3240.94Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC2_ALHEH5.119e-3246.33Glucose-1-phosphate adenylyltransferase 2 OS=Alkal... [more]
GLGC_STRMU6.686e-3245.83Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
back to top