FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.686e-32
Identity = 78/182 (42.86%), Postives = 111/182 (60.99%), Query Frame = 3
Query:  279 DLEMEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            DL    +  R   A+IL GG GTRL  LT  RAKPAVP GG +R+ID P+SNC+NSGI ++ + TQY + SL  H+ + + +  G  F +  +E+L A Q   E+   W+QGTADAV Q     +  R+   + VLIL GDH+Y+MDY   + +H    A++TI+C+ +    AS FG+M +
Sbjct:    6 DLRSYSQITRNSIAMILAGGRGTRLRQLTDWRAKPAVPFGGKFRIIDFPLSNCVNSGIRRIGVATQYKAQSLISHIQQGWGFLDG-RFQE-FIELLPAQQRTEES---WYQGTADAVYQ---NIDILRSHNPDYVLILGGDHVYKMDYAKLLADHIAKSAEMTIACIDLPLEEASAFGVMSV 179          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC1_ALHEH (Glucose-1-phosphate adenylyltransferase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.732e-32
Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R  R   A+I+ GG G RL  LT  R KPAVP GG +RLID P+SNCINSGI ++ +LTQY + SL +H+ R + +  G  FG+  VE++ A Q   +    W+ GTADAV Q   + +         VL+L+GDH+Y+MDY   +  H +SGA +T+ C+ +  +RAS FG+M +
Sbjct:   12 RLTRDTLALIMAGGRGGRLSNLTDWRTKPAVPFGGKFRLIDFPLSNCINSGIRRIEVLTQYKAHSLIQHIQRGWGFLRG-EFGE-FVELVPAQQRMDK--PLWYAGTADAVYQNIDIIKAHNPSY---VLVLAGDHVYKMDYGGMIARHAESGAAMTVGCVEVPRKRASAFGVMSV 180          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_GEOLS (Glucose-1-phosphate adenylyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.140e-31
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R   A++L GG G RL PLT +RAKP+V  GG Y++ID  +SN  NSGI ++YILTQY + SLN+H+  ++   +G+  G+ CV +   T +  E   +WF+GTADA+ Q+    E       + V +  GDH+Y+MD    +Q HR + AD+TI+ L +    AS FG+  +
Sbjct:    9 RNTIAMVLAGGKGERLMPLTLRRAKPSVTFGGKYKIIDFVLSNLFNSGIRRMYILTQYRAYSLNKHIRESWGKWTGL--GEFCVAISPETSSDSE---QWFKGTADAILQYLRFVE---TADADYVAVFGGDHIYKMDVTQMIQFHRMNRADLTIASLEVPKEEASRFGVFSV 173          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRA3 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype III GN=glgC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.945e-31
Identity = 77/168 (45.83%), Postives = 106/168 (63.10%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGIN V ++TQY    LN H+    ++G  G+  G   ++  +AT+     G RWFQGT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGINNVGVITQYQPLELNTHIGNGSSWGLDGIDSGVTVLQPYSATE-----GNRWFQGTSHAIYQ-NIDYIDRINP--EYVLILSGDHIYKMDYDDMLQTHKDNLASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_RHISN (Glucose-1-phosphate adenylyltransferase OS=Rhizobium sp. (strain NGR234) GN=glgC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.945e-31
Identity = 79/182 (43.41%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  288 MEKRD---ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +EKR    AR   A +L GG G+RL  LT +RAKPAV  GG  R+ID  +SN +NSGI ++ + TQY + SL RHL R +N+       +   ++L A+Q   E   +W++GTADAV Q   + ED     +E ++IL+GDH+Y+MDY   +Q H  SGAD+TI CL +    A+ FG+M +
Sbjct:    2 VEKRTQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWNFFRPER--NESFDILPASQRVSET--QWYEGTADAVFQNIDIIED---HGVEYMVILAGDHIYKMDYELMLQQHVDSGADVTIGCLEVPRMEATGFGVMHV 176          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_RHIME (Glucose-1-phosphate adenylyltransferase OS=Rhizobium meliloti GN=glgC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31
Identity = 78/182 (42.86%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  288 MEKRD---ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            +EKR    AR   A +L GG G+RL  LT +RAKPAV  GG  R+ID  +SN +NSGI ++ + TQY + SL RHL R +N+       +   ++L A+Q   E   +W++GTADAV Q   + ED     +E ++IL+GDH+Y+MDY   +Q H  SGAD+T+ CL +    A+ FG+M +
Sbjct:    2 VEKRTQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWNFFRPER--NESFDILPASQRVSET--QWYEGTADAVYQNIDIIED---HGVEYMVILAGDHVYKMDYELMLQQHVDSGADVTVGCLEVPRMEATGFGVMHV 176          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRZT (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRZP (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain P1031) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRZJ (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain JJA) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRSV (Glucose-1-phosphate adenylyltransferase OS=Streptococcus sanguinis (strain SK36) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVITQYQPLALNSHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSINP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_NITMU6.686e-3242.86Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC1_ALHEH8.732e-3243.75Glucose-1-phosphate adenylyltransferase 1 OS=Alkal... [more]
GLGC_GEOLS1.140e-3141.04Glucose-1-phosphate adenylyltransferase OS=Geobact... [more]
GLGC_STRA31.945e-3145.83Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_RHISN1.945e-3143.41Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHIME2.541e-3142.86Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_STRZT3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRZP3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRZJ3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRSV3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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