FC878086

Overview
NameFC878086
Unique NameFC878086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11745 contig Ccv1_Contig11745:43..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRPS (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain CGSP14) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLAKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGIDSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRPN (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRPJ (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRPI (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRP7 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain 70585) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRP4 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q +  + D  N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ-NIDYIDSVNP--EYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_NITEU (Glucose-1-phosphate adenylyltransferase OS=Nitrosomonas europaea GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 3
Query:  306 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMKI 824
            R   A+IL GG GTRL  LT  RAKPAVP GG +R+ID  +SNC+NSG+ ++ ++TQY + SL RH+ R +++  G  F +  +E+L A Q   E    W+QGTADAV Q     +  R      VLIL GDH+Y+MDY   +  H +  AD+TI+CL +    AS FG+M +
Sbjct:   21 RNTLALILAGGRGTRLKNLTDWRAKPAVPFGGKFRIIDFTLSNCVNSGVRRIGVVTQYKAQSLIRHIQRGWSFLDG-RFQE-FIELLPAQQRTEEG--TWYQGTADAVFQ---NLDILRTHNPGYVLILGGDHIYKMDYGRILAEHVERQADLTIACLEVPVEDASAFGVMAV 186          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_CORDI (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium diphtheriae GN=glgC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 74/175 (42.29%), Postives = 107/175 (61.14%), Query Frame = 3
Query:  297 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLMK 821
            R  + V A++L GG G RL+PLT+ RAKPAVP GG YRLID  +SN +N+G  K+ +LTQY S SL+RH+++A+ + SG T      + +A+       GKRW+ G+ADA+ Q   L  D R    + VL+   DH+YRMD    V +H  SG  +T++ + +    AS FG ++
Sbjct:   24 RSKQNVLAIVLAGGEGKRLFPLTEDRAKPAVPFGGTYRLIDFVLSNLVNAGYLKICVLTQYKSHSLDRHISQAWQF-SGPT-----SQYIASVPAQQRLGKRWYMGSADAILQSLNLVYDERP---DYVLVFGADHVYRMDPEQMVADHIASGKAVTVAGIRVPRSEASAFGCIQ 189          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRR6 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.334e-31
Identity = 73/168 (43.45%), Postives = 106/168 (63.10%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q     +   N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ---NIDYIDNVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
BLAST of FC878086 vs. ExPASy Swiss-Prot
Match: GLGC_STRP2 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=glgC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.334e-31
Identity = 73/168 (43.45%), Postives = 106/168 (63.10%), Query Frame = 3
Query:  318 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDRRASDFGLM 818
            A+IL GG GTRL  LT+  AKPAV  GG YR+ID  +SNC NSGI+ V ++TQY   +LN H+    ++G  G+  G   ++  +A++     G RWF+GT+ A+ Q     +   N   E VLILSGDH+Y+MDY D +Q+H+ + A +T++ L +  + AS FG+M
Sbjct:    7 ALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGIHNVGVVTQYQPLALNNHIGNGSSWGLDGINSGVSILQPYSASE-----GNRWFEGTSHAIYQ---NIDYIDNVNPEYVLILSGDHIYKMDYDDMLQSHKDNNASLTVAVLDVPLKEASRFGIM 166          
The following BLAST results are available for this feature:
BLAST of FC878086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_STRPS3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPN3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPJ3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRPI3.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRP73.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRP43.318e-3144.05Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_NITEU3.318e-3145.09Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_CORDI3.318e-3142.29Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_STRR64.334e-3143.45Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRP24.334e-3143.45Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878086 ID=FC878086; Name=FC878086; organism=Citrus clementina; type=EST; length=826bp
ATAATTTTGAATTACAATTTTCTCCTTGAGAGTTCAAGAAAATGGCACTC
TCGGCCGATGGCCGGTTTTCCCTCTCAGCAACCGGCCAGCTACGTGGCGC
GAGGGGATTGGCAGCAGGGAGCAGGAACTGGAGGCTTGTCAAGTCTTGCA
ATGGAGAGTTGATGGGCACAAAGCTTAATCCGAATGCAAAACATCGAAAT
GAGGCTGGCAGCAAACTTGTTCAGAAACAAGTTTGCATGACTCTTACGGC
TGACATAGCAGGCGAGTCCAAGTTAAGAGATTTGGAGATGGAGAAGCGTG
ATGCACGCACAGTTGCAGCGGTCATTCTGGGAGGAGGAGCTGGGACCCGT
CTCTACCCTCTCACTAAACAACGTGCCAAGCCTGCTGTTCCAATTGGAGG
TGCATACAGGCTGATTGATGTGCCAATGAGCAATTGCATCAACAGTGGAA
TTAACAAAGTCTACATTCTCACTCAATACAACTCAGCATCACTCAACAGG
CATCTTGCTCGTGCTTACAACTACGGCAGCGGGGTAACCTTTGGAGATGG
ATGTGTTGAGGTTCTAGCTGCCACTCAAACTCCTGGAGAAGCAGGTAAAA
GATGGTTCCAGGGTACTGCGGATGCTGTGAGACAATTTCATTGGCTTTTT
GAGGATCCGAGAAATAAAGTAATTGAAGATGTCCTGATTCTATCTGGGGA
TCACTTGTATAGAATGGACTATATGGACTTTGTCCAGAATCATCGGCAGA
GTGGTGCAGACATCACTATCTCTTGTCTGCCTATGGATGACCGTCGTGCC
TCAGATTTTGGTCTGATGAAAATTAA
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