FC878090

Overview
NameFC878090
Unique NameFC878090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.330e-51
Identity = 124/323 (38.39%), Postives = 181/323 (56.04%), Query Frame = 3
Query:    3 VTWVEHAEY--DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDA-AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP-----------------------DGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNN 887
            V WVEH E   +E  +  +++  + SG  FGA RW++ LQRQCE LA  ++ +++  D   I T   R +M+KL+QRM   FCA + AS    W  L+    D  +RV TRK+ + PG+P G++L+A ++ WLP + Q++F  L DE+ R + +ILSNGG + E+AHIA G    NC+SLLR +A  N++Q+  L+LQE+ T    GSLVV+A VD+ A+ V M+G D +Y+ LLP GFAI P                       +G  S  P                     LLTV  Q+L +++P+AKL + SV  +N+
Sbjct:  537 VVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIA--DLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDT-IRVTTRKNTE-PGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTP-PRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINS 854          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 7.330e-51
Identity = 124/323 (38.39%), Postives = 181/323 (56.04%), Query Frame = 3
Query:    3 VTWVEHAEY--DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDA-AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP-----------------------DGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNN 887
            V WVEH E   +E  +  +++  + SG  FGA RW++ LQRQCE LA  ++ +++  D   I T   R +M+KL+QRM   FCA + AS    W  L+    D  +RV TRK+ + PG+P G++L+A ++ WLP + Q++F  L DE+ R + +ILSNGG + E+AHIA G    NC+SLLR +A  N++Q+  L+LQE+ T    GSLVV+A VD+ A+ V M+G D +Y+ LLP GFAI P                       +G  S  P                     LLTV  Q+L +++P+AKL + SV  +N+
Sbjct:  537 VVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIA--DLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDT-IRVTTRKNTE-PGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTP-PRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINS 854          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: ROC9_ORYSJ (Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.133e-50
Identity = 118/307 (38.44%), Postives = 170/307 (55.37%), Query Frame = 3
Query:    3 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKL----NAGNVDEDVRVMTRKSV-DDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQ-SSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGF-AIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVN-SLPTAKLTVESVETVNNLIS 896
            +TWVEH       V  LY+ +  SG+ FGA+RWVA LQ QCE +   ++T+V  RD T + T  GRRS+LKLA RMT + C     S    W +     + G  D+D+ + +R++  DDPGEP G++  AA S WLPV+P  L + LRDE  R EWD++  G  +Q   ++AKG+D  NCV+   A      +     +LQ+ CT+   S + YA +D  A+  V+ G DS+ V LLP GF +++PDG +S+  +                    L+TVAFQ+  + S   A L+ +SVE V  L+S
Sbjct:  496 MTWVEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCERMVFAVATNVPTRDSTGVSTLAGRRSVLKLAHRMTSSLCRTTGGSCDMAWRRAPKGGSGGGGDDDIWLTSRENAGDDPGEPQGLIACAAASTWLPVNPTALLDLLRDESRRPEWDVMLPGKSVQSRVNLAKGKDRTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTIAYAAIDAAALQPVIAGHDSSGVHLLPCGFISVMPDGLESKPAV-----ITASRRGGEASGAGSLVTVAFQVPASPSAAAATLSPDSVEAVTVLVS 797          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG8_ARATH (Homeobox-leucine zipper protein HDG8 OS=Arabidopsis thaliana GN=HDG8 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.298e-43
Identity = 110/321 (34.27%), Postives = 172/321 (53.58%), Query Frame = 3
Query:    3 VTWVEHAEYDES-QVHQLYKPLIISGMGFGAQRWVATLQRQCECLAI--LMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD------EDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETC-----------TDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLP--TAKLTVESVETVNNLIS 896
            V W+EH E D     H++Y+ L+  G G+GA+RW+ TL+R CE +A+  + +   S R     T   RRS++KL +RM  NF   +  S          G +D        VRV  R +++  G+PPGIV+SA++S+ +P++P ++F FL++   R +WDILS G  + E+A I  G    NCV++LR    +   +  +++Q++C            DA G ++VYAP+D+  MH  ++G  D +++ +LPSGF I  DG  S                        LLTVAFQILV+     + ++  +SV+TV+ LIS
Sbjct:  392 VMWIEHVEVDHKLDTHKIYRDLLSGGSGYGAKRWIVTLERMCERMALSSIQTLPPSDRSEVITTGEARRSVMKLGERMVKNFNEMLTMS----------GKIDFPQQSKNGVRVSIRMNIE-AGQPPGIVVSASSSLAIPLTPLQVFAFLQNLDTRQQWDILSYGTVVNEIARIVTGSSETNCVTILRVHPTHEENNDKMVVQDSCKDDMLMLQDCYMDALGGMIVYAPMDMATMHFAVSGEVDPSHIPILPSGFVISSDGRRS-----------------TVEDGGTLLTVAFQILVSGKANRSREVNEKSVDTVSALIS 684          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG4_ARATH (Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana GN=HDG4 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.253e-42
Identity = 108/300 (36.00%), Postives = 168/300 (56.00%), Query Frame = 3
Query:    3 VTWVEHAEYDESQVH-QLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASA-INANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLI 893
            VTWVEH E +E  V  ++ +  + SG+ FGA+RW++ L+RQCE +A LM+T+++  D   I +   R++++KL+QRM   FC  +        N        + V++++RK         G+V  A +   LP S Q++F+ LRD +  S+ +IL  G   QE+AHIA G   GN +SLLR +   N++ +  L+LQETCTD +GSL+VY+ VD  A+ + MNG D + + LLP GF++VP  P                          LLTVA Q+L +++ T +L + +V  +N+ I
Sbjct:  420 VTWVEHVEVEEKHVQDEVVREFVESGVAFGAERWLSVLKRQCERMASLMATNIT--DLGVIPSVEARKNLMKLSQRMVKTFCLNII-------NSHGQAPTKDTVKIVSRKVCG------GLVPCAVSVTLLPYSHQQVFDLLRDNQRLSQLEILFMGSSFQEVAHIANGSHLGNSISLLRINVESNSSHNVELMLQETCTDNSGSLLVYSTVDPVAVQLAMNGEDPSEIPLLPVGFSVVPVNPSD------------GVEGSSVSSPSCLLTVAIQVLGSNVTTERLDLSTVSVINHRI 692          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG10_ARATH (Homeobox-leucine zipper protein HDG10 OS=Arabidopsis thaliana GN=HDG10 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.822e-40
Identity = 107/308 (34.74%), Postives = 166/308 (53.90%), Query Frame = 3
Query:    3 VTWVEHAEY-DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN----AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVN--SLPTAKLTVESVETVNNLIS 896
            VTW+EH E  D+   HQLY+ L+  G G+GA+RW ATLQR CE L++   T     D+  +  T  GRRS++ L +RM  NF     A  +   +KL+    +G  +  VR+  R + +  G+PPG+++ A +S+ LP+ P ++++FLR+  +R +WD+   G P+ E A    G D  N V+ L+ S++   +  ++ILQ+   DA G +VVYAP+++   +  ++G  D + + +LPSGF I  D   S   +                    LLT+AFQI V   S  T     +S  TVN L+S
Sbjct:  410 VTWIEHVEVTDKVWPHQLYRDLLYGGFGYGARRWTATLQRMCERLSLYSMTDFPPTDYPGVVKTIEGRRSVMSLGERMLKNF-----AWIMKMSDKLDLPQQSGANNSGVRISVRTNTE-AGQPPGLIVCAGSSLSLPLPPLQVYDFLRNLEVRHQWDVHCQGNPVTEAARFVTGPDQKNNVTFLQPSSV--GEYKLMILQDGFIDALGGMVVYAPMNLNTAYSAISGQVDPSTIPILPSGFIISRDSHPSSSEV--------------DGGSMTLLTLAFQIFVTGPSYYTDLNLKDSATTVNTLVS 695          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG9_ARATH (Homeobox-leucine zipper protein HDG9 OS=Arabidopsis thaliana GN=HDG9 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.889e-39
Identity = 113/313 (36.10%), Postives = 169/313 (53.99%), Query Frame = 3
Query:    3 VTWVEHAEYDESQV--HQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA---RDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNS---LPTAKLTVESVETVNNLIS 896
            VTW+EH   ++++V  H+LY+ L+  G G+GA+RW  TL+R CE L  + STSV A    D+  +  T  GR S++ L +RM  NF     A  +   NKL+     E     +R+  R + ++ G+PPG+++ A +S+ LP+ P ++++FL++  +R +WD+L +G P  E A    G +  N VS L  S  + N + ++ILQ++  DA G +V YAP+D+      ++G  D   + +LPSGF I  DG  S G                      LLTVAFQILV+     P   L V S  TVN LIS
Sbjct:  417 VTWIEHVVVNDNRVRPHKLYRDLLYGGFGYGARRWTVTLERTCERL--IFSTSVPALPNNDNPGVVQTIRGRNSVMHLGERMLRNF-----AWMMKMVNKLDFSPQSETNNSGIRIGVRIN-NEAGQPPGLIVCAGSSLSLPLPPVQVYDFLKNLEVRHQWDVLCHGNPATEAARFVTGSNPRNTVSFLEPSIRDIN-TKLMILQDSFKDALGGMVAYAPMDLNTACAAISGDIDPTTIPILPSGFMISRDGRPSEG--------------EAEGGSYTLLTVAFQILVSGPSYSPDTNLEV-SATTVNTLIS 705          
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: TF1_ORYSJ (Homeobox-leucine zipper protein TF1 OS=Oryza sativa subsp. japonica GN=TF1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.382e-27
Identity = 75/249 (30.12%), Postives = 136/249 (54.62%), Query Frame = 3
Query:    3 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRAS-AINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVM---------NGGDSAYVALLPSGFAIVPD 719
            VT +EH   D++ VH+LY+P + +G+ FGA+RWVAT+ RQ   +  +     + +    ++  GR++++KLA  +  +F  G+ A+    W  +     ++D+RV  R++ +       I LS   S+ LP+  ++ F+ LR+   R +WD+L +G  ++E   IA+G  + + V++L    A   ++   +ILQ    DA+GS +VY+ +D   M+ ++          GG S Y    P+GF+++PD
Sbjct:  397 VTAIEHVLADDTGVHELYQPCM-NGLVFGARRWVATMARQSARMRDVHHNKTAPQ----VSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEGSSSYNAI-LSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPSLY----PTGFSLLPD 635          
The following BLAST results are available for this feature:
BLAST of FC878090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
ROC3_ORYSJ7.330e-5138.39Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC3_ORYSI7.330e-5138.39Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC9_ORYSJ2.133e-5038.44Homeobox-leucine zipper protein ROC9 OS=Oryza sati... [more]
HDG8_ARATH3.298e-4334.27Homeobox-leucine zipper protein HDG8 OS=Arabidopsi... [more]
HDG4_ARATH1.253e-4236.00Homeobox-leucine zipper protein HDG4 OS=Arabidopsi... [more]
HDG10_ARATH5.822e-4034.74Homeobox-leucine zipper protein HDG10 OS=Arabidops... [more]
HDG9_ARATH2.889e-3936.10Homeobox-leucine zipper protein HDG9 OS=Arabidopsi... [more]
TF1_ORYSJ7.382e-2730.12Homeobox-leucine zipper protein TF1 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878090 ID=FC878090; Name=FC878090; organism=Citrus clementina; type=EST; length=898bp
AGGTGACATGGGTTGAGCATGCAGAATACGATGAAAGCCAAGTCCACCAA
CTCTACAAACCCTTGATAATCTCCGGAATGGGCTTCGGCGCCCAACGGTG
GGTCGCCACCCTTCAAAGACAATGCGAGTGCCTAGCCATTCTCATGTCCA
CCAGCGTCTCCGCCAGAGATCACACCGCAATAACTGCGGGTGGGCGACGA
AGCATGTTGAAGCTAGCACAGAGAATGACTGATAATTTCTGCGCTGGGGT
GTGCGCTTCAACTGTCCACAAATGGAACAAGCTCAATGCTGGCAATGTCG
ATGAAGACGTTAGGGTTATGACCAGAAAGAGCGTTGACGATCCCGGTGAG
CCTCCAGGCATCGTGTTAAGCGCTGCCACCTCCGTTTGGCTGCCGGTGTC
TCCTCAAAGACTCTTCAATTTTCTACGTGATGAGCGGCTTAGAAGCGAGT
GGGATATTTTGTCGAACGGTGGGCCCATGCAGGAGATGGCCCACATTGCT
AAAGGACAAGATCACGGCAACTGCGTCTCCCTTCTACGTGCTAGTGCCAT
AAACGCAAACCAGAGCAGCATGTTGATACTACAGGAGACATGCACAGACG
CCGCTGGGTCGCTTGTCGTCTACGCGCCCGTTGACATCCCGGCCATGCAC
GTGGTGATGAACGGTGGTGATTCTGCCTACGTGGCTCTCCTTCCTTCTGG
ATTTGCAATTGTTCCAGATGGTCCAGACTCACGAGGGCCCCTGGCTAATG
GCCCCACAAGTGGGAATGGGAGCAACGGTGGGTCACAGAGAGTGGGTGGC
TCGCTTTTAACAGTGGCCTTCCAAATCTTGGTGAATAGTCTTCCGACGGC
CAAGCTTACGGTAGAATCTGTGGAGACGGTCAACAATCTAATATCATG
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