FC878090
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 7.330e-51 Identity = 124/323 (38.39%), Postives = 181/323 (56.04%), Query Frame = 3 Query: 3 VTWVEHAEY--DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDA-AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP-----------------------DGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNN 887 V WVEH E +E + +++ + SG FGA RW++ LQRQCE LA ++ +++ D I T R +M+KL+QRM FCA + AS W L+ D +RV TRK+ + PG+P G++L+A ++ WLP + Q++F L DE+ R + +ILSNGG + E+AHIA G NC+SLLR +A N++Q+ L+LQE+ T GSLVV+A VD+ A+ V M+G D +Y+ LLP GFAI P +G S P LLTV Q+L +++P+AKL + SV +N+ Sbjct: 537 VVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIA--DLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDT-IRVTTRKNTE-PGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTP-PRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINS 854
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2) HSP 1 Score: 201.06 bits (510), Expect = 7.330e-51 Identity = 124/323 (38.39%), Postives = 181/323 (56.04%), Query Frame = 3 Query: 3 VTWVEHAEY--DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDA-AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP-----------------------DGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNN 887 V WVEH E +E + +++ + SG FGA RW++ LQRQCE LA ++ +++ D I T R +M+KL+QRM FCA + AS W L+ D +RV TRK+ + PG+P G++L+A ++ WLP + Q++F L DE+ R + +ILSNGG + E+AHIA G NC+SLLR +A N++Q+ L+LQE+ T GSLVV+A VD+ A+ V M+G D +Y+ LLP GFAI P +G S P LLTV Q+L +++P+AKL + SV +N+ Sbjct: 537 VVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIA--DLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDT-IRVTTRKNTE-PGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTP-PRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINS 854
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: ROC9_ORYSJ (Homeobox-leucine zipper protein ROC9 OS=Oryza sativa subsp. japonica GN=ROC9 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.133e-50 Identity = 118/307 (38.44%), Postives = 170/307 (55.37%), Query Frame = 3 Query: 3 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKL----NAGNVDEDVRVMTRKSV-DDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQ-SSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGF-AIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVN-SLPTAKLTVESVETVNNLIS 896 +TWVEH V LY+ + SG+ FGA+RWVA LQ QCE + ++T+V RD T + T GRRS+LKLA RMT + C S W + + G D+D+ + +R++ DDPGEP G++ AA S WLPV+P L + LRDE R EWD++ G +Q ++AKG+D NCV+ A + +LQ+ CT+ S + YA +D A+ V+ G DS+ V LLP GF +++PDG +S+ + L+TVAFQ+ + S A L+ +SVE V L+S Sbjct: 496 MTWVEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCERMVFAVATNVPTRDSTGVSTLAGRRSVLKLAHRMTSSLCRTTGGSCDMAWRRAPKGGSGGGGDDDIWLTSRENAGDDPGEPQGLIACAAASTWLPVNPTALLDLLRDESRRPEWDVMLPGKSVQSRVNLAKGKDRTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTIAYAAIDAAALQPVIAGHDSSGVHLLPCGFISVMPDGLESKPAV-----ITASRRGGEASGAGSLVTVAFQVPASPSAAAATLSPDSVEAVTVLVS 797
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG8_ARATH (Homeobox-leucine zipper protein HDG8 OS=Arabidopsis thaliana GN=HDG8 PE=2 SV=2) HSP 1 Score: 175.637 bits (444), Expect = 3.298e-43 Identity = 110/321 (34.27%), Postives = 172/321 (53.58%), Query Frame = 3 Query: 3 VTWVEHAEYDES-QVHQLYKPLIISGMGFGAQRWVATLQRQCECLAI--LMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD------EDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETC-----------TDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLP--TAKLTVESVETVNNLIS 896 V W+EH E D H++Y+ L+ G G+GA+RW+ TL+R CE +A+ + + S R T RRS++KL +RM NF + S G +D VRV R +++ G+PPGIV+SA++S+ +P++P ++F FL++ R +WDILS G + E+A I G NCV++LR + + +++Q++C DA G ++VYAP+D+ MH ++G D +++ +LPSGF I DG S LLTVAFQILV+ + ++ +SV+TV+ LIS Sbjct: 392 VMWIEHVEVDHKLDTHKIYRDLLSGGSGYGAKRWIVTLERMCERMALSSIQTLPPSDRSEVITTGEARRSVMKLGERMVKNFNEMLTMS----------GKIDFPQQSKNGVRVSIRMNIE-AGQPPGIVVSASSSLAIPLTPLQVFAFLQNLDTRQQWDILSYGTVVNEIARIVTGSSETNCVTILRVHPTHEENNDKMVVQDSCKDDMLMLQDCYMDALGGMIVYAPMDMATMHFAVSGEVDPSHIPILPSGFVISSDGRRS-----------------TVEDGGTLLTVAFQILVSGKANRSREVNEKSVDTVSALIS 684
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG4_ARATH (Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana GN=HDG4 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.253e-42 Identity = 108/300 (36.00%), Postives = 168/300 (56.00%), Query Frame = 3 Query: 3 VTWVEHAEYDESQVH-QLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASA-INANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLI 893 VTWVEH E +E V ++ + + SG+ FGA+RW++ L+RQCE +A LM+T+++ D I + R++++KL+QRM FC + N + V++++RK G+V A + LP S Q++F+ LRD + S+ +IL G QE+AHIA G GN +SLLR + N++ + L+LQETCTD +GSL+VY+ VD A+ + MNG D + + LLP GF++VP P LLTVA Q+L +++ T +L + +V +N+ I Sbjct: 420 VTWVEHVEVEEKHVQDEVVREFVESGVAFGAERWLSVLKRQCERMASLMATNIT--DLGVIPSVEARKNLMKLSQRMVKTFCLNII-------NSHGQAPTKDTVKIVSRKVCG------GLVPCAVSVTLLPYSHQQVFDLLRDNQRLSQLEILFMGSSFQEVAHIANGSHLGNSISLLRINVESNSSHNVELMLQETCTDNSGSLLVYSTVDPVAVQLAMNGEDPSEIPLLPVGFSVVPVNPSD------------GVEGSSVSSPSCLLTVAIQVLGSNVTTERLDLSTVSVINHRI 692
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG10_ARATH (Homeobox-leucine zipper protein HDG10 OS=Arabidopsis thaliana GN=HDG10 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.822e-40 Identity = 107/308 (34.74%), Postives = 166/308 (53.90%), Query Frame = 3 Query: 3 VTWVEHAEY-DESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLN----AGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVN--SLPTAKLTVESVETVNNLIS 896 VTW+EH E D+ HQLY+ L+ G G+GA+RW ATLQR CE L++ T D+ + T GRRS++ L +RM NF A + +KL+ +G + VR+ R + + G+PPG+++ A +S+ LP+ P ++++FLR+ +R +WD+ G P+ E A G D N V+ L+ S++ + ++ILQ+ DA G +VVYAP+++ + ++G D + + +LPSGF I D S + LLT+AFQI V S T +S TVN L+S Sbjct: 410 VTWIEHVEVTDKVWPHQLYRDLLYGGFGYGARRWTATLQRMCERLSLYSMTDFPPTDYPGVVKTIEGRRSVMSLGERMLKNF-----AWIMKMSDKLDLPQQSGANNSGVRISVRTNTE-AGQPPGLIVCAGSSLSLPLPPLQVYDFLRNLEVRHQWDVHCQGNPVTEAARFVTGPDQKNNVTFLQPSSV--GEYKLMILQDGFIDALGGMVVYAPMNLNTAYSAISGQVDPSTIPILPSGFIISRDSHPSSSEV--------------DGGSMTLLTLAFQIFVTGPSYYTDLNLKDSATTVNTLVS 695
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: HDG9_ARATH (Homeobox-leucine zipper protein HDG9 OS=Arabidopsis thaliana GN=HDG9 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.889e-39 Identity = 113/313 (36.10%), Postives = 169/313 (53.99%), Query Frame = 3 Query: 3 VTWVEHAEYDESQV--HQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA---RDHTAI--TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGG-DSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXXLLTVAFQILVNS---LPTAKLTVESVETVNNLIS 896 VTW+EH ++++V H+LY+ L+ G G+GA+RW TL+R CE L + STSV A D+ + T GR S++ L +RM NF A + NKL+ E +R+ R + ++ G+PPG+++ A +S+ LP+ P ++++FL++ +R +WD+L +G P E A G + N VS L S + N + ++ILQ++ DA G +V YAP+D+ ++G D + +LPSGF I DG S G LLTVAFQILV+ P L V S TVN LIS Sbjct: 417 VTWIEHVVVNDNRVRPHKLYRDLLYGGFGYGARRWTVTLERTCERL--IFSTSVPALPNNDNPGVVQTIRGRNSVMHLGERMLRNF-----AWMMKMVNKLDFSPQSETNNSGIRIGVRIN-NEAGQPPGLIVCAGSSLSLPLPPVQVYDFLKNLEVRHQWDVLCHGNPATEAARFVTGSNPRNTVSFLEPSIRDIN-TKLMILQDSFKDALGGMVAYAPMDLNTACAAISGDIDPTTIPILPSGFMISRDGRPSEG--------------EAEGGSYTLLTVAFQILVSGPSYSPDTNLEV-SATTVNTLIS 705
BLAST of FC878090 vs. ExPASy Swiss-Prot
Match: TF1_ORYSJ (Homeobox-leucine zipper protein TF1 OS=Oryza sativa subsp. japonica GN=TF1 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 7.382e-27 Identity = 75/249 (30.12%), Postives = 136/249 (54.62%), Query Frame = 3 Query: 3 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRAS-AINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVM---------NGGDSAYVALLPSGFAIVPD 719 VT +EH D++ VH+LY+P + +G+ FGA+RWVAT+ RQ + + + + ++ GR++++KLA + +F G+ A+ W + ++D+RV R++ + I LS S+ LP+ ++ F+ LR+ R +WD+L +G ++E IA+G + + V++L A ++ +ILQ DA+GS +VY+ +D M+ ++ GG S Y P+GF+++PD Sbjct: 397 VTAIEHVLADDTGVHELYQPCM-NGLVFGARRWVATMARQSARMRDVHHNKTAPQ----VSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRRTTEGSSSYNAI-LSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQIDSELMNTMVLSPSDLPPGRGGPSLY----PTGFSLLPD 635 The following BLAST results are available for this feature:
BLAST of FC878090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878090 ID=FC878090; Name=FC878090; organism=Citrus clementina; type=EST; length=898bpback to top |