FC878092

Overview
NameFC878092
Unique NameFC878092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length940
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: FUCO3_ARATH (Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FXG1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.883e-12
Identity = 70/257 (27.24%), Postives = 108/257 (42.02%), Query Frame = 3
Query:  153 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELN--GQRLLIGANFASAGIGI------LNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQAR----QLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAEL------ALRGSNGGCSAELQRATSLYNPALEQMLQEINRKIGQ 869
            A F FGDS  D+G    L+       PP+G  F    P GR+ +G  + D I++ +G     LPYLS  L+  G     GANFA+AG  I      L  +G    ++   F Q   F    + V +  G  +         ++AL    +G ND    Y+     A      +   V  IIS++   +  +Y  G R   +  TGP+GC+   +      A    + GC + L      +N AL+Q + E+   + +
Sbjct:   30 AIFNFGDSNSDTGG---LSAAFGQAGPPHGSSF-FGSPAGRYCDGRLVIDFIAESLG-----LPYLSAFLDSVGSNFSHGANFATAGSPIRALNSTLRQSGFSPFSLDVQFVQFYNFHNRSQTVRSRGGVYKTMLPESDSFSKALYTFDIGQNDLTAGYF-----ANKTVEQVETEVPEIISQFMNAIKNIYGQGGRYFWIHNTGPIGCLAYVIERFPNKASDFDSHGCVSPLNHLAQQFNHALKQAVIELRSSLSE 272          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL91_ARATH (GDSL esterase/lipase At1g28640 OS=Arabidopsis thaliana GN=At1g28640 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12
Identity = 82/318 (25.79%), Postives = 136/318 (42.77%), Query Frame = 3
Query:   63 SSASVAMRSWMMIIGIAFALGSIVRLAEAR-----AFFVFGDSLVDSGNNNYLATTARADAP---PYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLI--GANFASAGIGILNDT-----GIQ--FVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLI-TVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAELALRGSNG--------GCSAELQRATSLYNPALEQMLQEINRKIGQTVFIAANTPQTHMDFISNPTAYG 938
            SS    + S+++++   ++   IV  +E+R     +   FGDS+ D+GN  +L+           PYG  F  H P+GR+S+G  I D I++ +G     LPY+      Q +    G NFA  G   L+       GI+  F N+  +  QL+ F +    +     ++  R+++  +L+L+  +G ND+  NY   P+        +   V  +I      ++ L +LG +  LV G  PLGC PA L L  +          GC   L      +N  L+  L+ +         I A+   +       P  YG
Sbjct:    3 SSLEKLISSFLLVL---YSTTIIVASSESRCRRFKSIISFGDSIADTGNYLHLSDVNHLPQSAFLPYGESF-FHPPSGRYSDGRLIIDFIAEFLG-----LPYVPSYFGSQNVSFDQGINFAVYGATALDRVFLVGKGIESDFTNV-SLSVQLNIFKQILPNL-CTSSSRDCREMLGDSLILMGEIGVNDY--NY---PFFEGKSINEIKQLVPLVIKAISSAIVDLIDLGGKTFLVPGNFPLGCYPAYLTLFQTAAEEDHDPFTGCIPRLNEFGEYHNEQLKTELKRLQELYDHVNIIYADYYNSLFRLYQEPVKYG 304          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL8_ARATH (GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.212e-12
Identity = 79/315 (25.08%), Postives = 131/315 (41.59%), Query Frame = 3
Query:   48 MAIATSSASVAMRSWMMIIGIAFALGSIVRLAEARAFFVFGDSLVDSGNNNYLATTARADA---PPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGI-----GILNDTGI-QFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLI-TVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAELALRGSNG--------GCSAELQRATSLYNPALEQMLQEINRKIGQTVFIAANTPQTHMDFISNPTAYG 938
            MA   S  ++ +  +++   +  ++ S  +    ++   FGDS+ D+GN   L+      A   PPYG  F  H PTGR+S+G  I D I++ +G    P  Y     N ++   G NFA AG        L + GI   +  + +  QL  F E    +         R ++  AL+L+  +GGND+  N+ L     R     +   V ++I+     +  L  +G R  LV G  P+G   + L L  ++         GC   L   +  YN  L++ L  + +       I A+     +     P  +G
Sbjct:    1 MASLDSLPAMKLVRFILSTLLVTSVNSQTQCRNFKSIISFGDSIADTGNLLGLSDPNDLPASAFPPYGETF-FHHPTGRYSDGRLIIDFIAEFLGFPLVPPFYGCQNANFKK---GVNFAVAGATALEPSFLEERGIHSTITNVSLSVQLRSFTESLPNLCG--SPSDCRDMIENALILMGEIGGNDY--NFALF---QRKPVKEVEELVPFVIATISSAITELVCMGGRTFLVPGNFPIGYSASYLTLYKTSNKEEYDPLTGCLKWLNDFSEYYNKQLQEELNGLRKLYPHVNIIYADYYNALLRLFQEPAKFG 304          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL16_ARATH (GDSL esterase/lipase At1g31550 OS=Arabidopsis thaliana GN=At1g31550 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.195e-12
Identity = 78/281 (27.76%), Postives = 115/281 (40.93%), Query Frame = 3
Query:  165 FGDSLVDSGN------NNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSP---ELNGQRLLIGANFASAGI-----GILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLI-TVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAELALRGSNG--------GCSAELQRATSLYNPALEQMLQEINRKIGQTVFIAANTPQTHMDFISNPTAYG 938
            FGDS+ D+GN      +N L  +A    PPYG  F  H PTGRFS+G  I D I++ +G     LPY+ P     NG     G NFA A         L + G    +   +  QL  F +    +  +      R ++  AL+L+  +G ND     Y  P+        +   V  +IS     +  L  +G R  LV G  PLGC  A L L  ++         GC   L +    ++  L++ L  + +       I A+     +     P+ YG
Sbjct:   40 FGDSIADTGNLLGLSDHNNLPMSA---FPPYGETF-FHHPTGRFSDGRLIIDFIAEFLG-----LPYVPPYFGSTNG-NFEKGVNFAVASATALESSFLEEKGYHCPHNFSLGVQLKIFKQSLPNLCGL--PSDCRDMIGNALILMGEIGAND-----YNFPFFQLRPLDEVKELVPLVISTISSAITELIGMGGRTFLVPGGFPLGCSVAFLTLHQTSNMEEYDPLTGCLKWLNKFGEYHSEQLQEELNRLRKLNPHVNIIYADYYNASLRLGREPSKYG 303          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL18_ARATH (GDSL esterase/lipase At1g54000 OS=Arabidopsis thaliana GN=At1g54000 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.082e-11
Identity = 66/239 (27.62%), Postives = 106/239 (44.35%), Query Frame = 3
Query:  153 AFFVFGDSLVDSGNNNYLATTARADAP-PYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNGQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAELALRGSNGG---CSAELQRATSLYNPALEQMLQEINR 857
            A F FGDS  D+GN   L  T  A    PYG       P G+FS+G   PD +++ +    A  P L P +N  R   GA+FA  G  +L       V  + + +Q+  F + +        A      V +++ +I +G ND++N     P +  S Q     +V  + ++ +  +  LY  GA + ++    PLGC+P  +  +  N G   C  +L      +N  +  ML E+ R
Sbjct:   36 ALFTFGDSNFDAGNKQTLTKTLVAQGFWPYGKS--RDDPNGKFSDGLITPDFLAKFMKIPLAIAPALQPNVNVSR---GASFAVEGATLLGAP----VESMTLNQQVKKFNQMK-------AANWNDDFVAKSVFMIYIGANDYLNFTKNNPTADASAQ---QAFVTSVTNKLKNDISALYSSGASKFVIQTLAPLGCLP--IVRQEYNTGMDQCYEKLNDLAKQHNEKIGPMLNEMAR 253          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL54_ARATH (GDSL esterase/lipase At3g27950 OS=Arabidopsis thaliana GN=At3g27950 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 71/295 (24.07%), Postives = 123/295 (41.69%), Query Frame = 3
Query:   93 MMIIGIAFALGSIVRLAEARAFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELN--GQRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQAR-------QLVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAEL----ALRGSNGGCSAELQRATSLYNPALEQMLQEINRKIGQTVFIAANTPQTHMDFISNPTAYG 938
            ++++G    L ++       A F FGDS  D+G    ++       PP G+ F   R  GR S+G  I D I++ +      LPYL+P L+  G     GANFA+ G  I     +   +   +  Q+  F  ++ R  ++      +          ++AL  + +G ND    +  +  +    + T+P     II  +   L  LY+ GAR   +  TGP GC+P  L    A+     GC   L      +N  L+  + ++ +++  + F   +      + I+   A G
Sbjct:   12 VLLLGFTEKLSALSSSCNFPAVFNFGDSNSDTGA---ISAAIGEVPPPNGVAF-FGRSAGRHSDGRLIIDFITENL-----TLPYLTPYLDSVGANYRHGANFATGGSCIRPT--LACFSPFHLGTQVSQFIHFKTRTLSLYNQTNGKFNRLSHTNYFSKALYTLDIGQNDLAIGFQNM--TEEQLKATIP----LIIENFTIALKLLYKEGARFFSIHNTGPTGCLPYLLKAFPAIPRDPYGCLKPLNNVAIEFNKQLKNKITQLKKELPSSFFTYVDVYSAKYNLITKAKALG 289          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL49_ARATH (GDSL esterase/lipase At3g05180 OS=Arabidopsis thaliana GN=At3g05180 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 69/278 (24.82%), Postives = 114/278 (41.01%), Query Frame = 3
Query:  153 AFFVFGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNG---QRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQ-------LVNRALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAELALRGSNG------GCSAELQRATSLYNPALEQMLQEINRKIGQTVFIAANTPQTHMDFISNPTAYG 938
            A F FGDS  D+G  +  +       P Y I F     +GRF NG  I D + + I +     PYL P L+    Q    G NFA+A   I       + +      Q+  F  ++ +V  +I   +  Q         +  L +  +G ND    +Y            +   V  I+  ++  + RLY  GAR   +  TGPLGC+   +++ G +       GC ++  +A  L+N  L  + +++ ++   + F   +      D I N + YG
Sbjct:   36 AVFNFGDSNSDTGELS--SGLGFLPQPSYEITFFRSPTSGRFCNGRLIVDFLMEAIDR-----PYLRPYLDSISRQTYRRGCNFAAAASTIQKANAASY-SPFGFGVQVSQFITFKSKVLQLIQQDEELQRYLPSEYFFSNGLYMFDIGQNDIAGAFYTKTVDQ------VLALVPIILDIFQDGIKRLYAEGARNYWIHNTGPLGCLAQVVSIFGEDKSKLDEFGCVSDHNQAAKLFNLQLHGLFKKLPQQYPNSRFTYVDIFSIKSDLILNHSKYG 299          
BLAST of FC878092 vs. ExPASy Swiss-Prot
Match: GDL60_ARATH (GDSL esterase/lipase At3g62280 OS=Arabidopsis thaliana GN=At3g62280 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 68/252 (26.98%), Postives = 101/252 (40.08%), Query Frame = 3
Query:  165 FGDSLVDSGNNNYLATTARADAPPYGIDFPTHRPTGRFSNGFNIPDIISQRIGQSEAPLPYLSPELNG--QRLLIGANFASAGIGILNDTGIQFVNIIRMFRQLDYFAEYQRRVSAVIGAQQARQLVN-----RALVLITVGGNDFVNNYYLVPYSARSRQFTLPNYVKYIISEYRKLLMRLYELGARRVLVTGTGPLGCVPAELALRGSNG------GCSAELQRATSLYNPALEQMLQEINRKIGQTVFI 881
            FGDS  D+G    LA        P+GI F  HR TGR  +G  I D   + +      + YLSP L+        G NFA +G   L          IR F        ++ R   +I + + R L++      AL +I +G ND +    L  Y +      +   +  ++ E +K +  +Y  G R+  V  TGPLGC P ELA+   N       GC          +N  L  +  E+  +      +
Sbjct:   40 FGDSNSDTGG--VLAGVGLPIGLPHGITF-FHRGTGRLGDGRLIVDFYCEHL-----KMTYLSPYLDSLSPNFKRGVNFAVSGATALPIFSFPLAIQIRQF------VHFKNRSQELISSGR-RDLIDDNGFRNALYMIDIGQNDLL----LALYDSNLTYAPVVEKIPSMLLEIKKAIQTVYLYGGRKFWVHNTGPLGCAPKELAIHLHNDSDLDPIGCFRVHNEVAKAFNKGLLSLCNELRSQFKDATLV 272          
The following BLAST results are available for this feature:
BLAST of FC878092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
FUCO3_ARATH1.883e-1227.24Alpha-L-fucosidase 3 OS=Arabidopsis thaliana GN=FX... [more]
GDL91_ARATH3.212e-1225.79GDSL esterase/lipase At1g28640 OS=Arabidopsis thal... [more]
GDL8_ARATH3.212e-1225.08GDSL esterase/lipase At1g28590 OS=Arabidopsis thal... [more]
GDL16_ARATH4.195e-1227.76GDSL esterase/lipase At1g31550 OS=Arabidopsis thal... [more]
GDL18_ARATH2.082e-1127.62GDSL esterase/lipase At1g54000 OS=Arabidopsis thal... [more]
GDL54_ARATH2.719e-1124.07GDSL esterase/lipase At3g27950 OS=Arabidopsis thal... [more]
GDL49_ARATH2.719e-1124.82GDSL esterase/lipase At3g05180 OS=Arabidopsis thal... [more]
GDL60_ARATH4.638e-1126.98GDSL esterase/lipase At3g62280 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA42CH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878092 ID=FC878092; Name=FC878092; organism=Citrus clementina; type=EST; length=940bp
AGAGTATATATCCATATATCTAATTAGAGTTTCGAAACAATATGTCAATG
GCTATTGCGACTTCATCGGCATCAGTAGCAATGCGTTCTTGGATGATGAT
TATTGGCATTGCATTTGCTTTAGGATCAATTGTTCGTCTTGCTGAGGCTC
GAGCTTTCTTCGTGTTTGGCGATTCACTCGTCGACAGCGGCAACAACAAC
TACCTCGCCACGACTGCCCGTGCAGACGCGCCGCCTTATGGGATTGATTT
TCCTACTCACCGTCCCACAGGCCGTTTCTCCAATGGCTTCAACATCCCTG
ACATTATCAGTCAGAGAATTGGCCAATCGGAAGCCCCATTGCCATACTTG
AGTCCAGAACTCAATGGACAGAGACTGCTCATTGGTGCCAACTTCGCTTC
AGCGGGAATTGGAATTCTCAATGACACCGGCATCCAATTTGTAAACATAA
TTAGAATGTTCAGACAATTGGATTACTTCGCGGAGTACCAGCGTCGAGTG
AGTGCTGTCATTGGAGCCCAGCAAGCTCGCCAACTTGTAAACCGAGCACT
AGTACTCATCACTGTCGGTGGCAATGATTTTGTGAATAACTATTACTTGG
TTCCGTACTCTGCAAGATCTCGCCAATTCACTTTGCCCAATTATGTCAAG
TATATCATCTCTGAGTACCGAAAATTATTAATGAGGTTATACGAATTGGG
AGCACGTAGGGTTCTTGTGACGGGTACCGGACCACTGGGTTGTGTTCCAG
CAGAGCTGGCCCTGAGGGGTTCCAACGGTGGATGCTCAGCTGAACTGCAA
AGAGCCACATCCTTGTACAACCCCGCACTCGAACAAATGCTACAAGAAAT
AAACAGAAAAATTGGTCAAACCGTCTTCATTGCCGCAAATACTCCACAGA
CGCACATGGATTTCATAAGCAACCCCACAGCATACGGATT
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