FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:109..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ANADF (Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=lipA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.798e-52
Identity = 98/192 (51.04%), Postives = 131/192 (68.23%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++ ++PGG +Y Q++  ++ L LHTVCEEA CPN+ ECW GG     TAT+M++GD CTRGCRFCNVKT             ++AEAIA  GLDY+V+TSVDRDDL D G+GHFA  +R+LK++ P +L+E L PDFRG+   VR V ++  +VFA+N+ETV  L   VRD +A + Q+L VL   K   P
Sbjct:    8 WLRVNVPGGARYQQVRDTVKGLALHTVCEEAHCPNVAECWGGG-----TATVMLMGDVCTRGCRFCNVKTDAHPPPLDPDEPRHLAEAIAELGLDYIVVTSVDRDDLPDGGAGHFADAIRRLKDI-PQLLVEVLTPDFRGDAEAVRTVGRARPDVFANNLETVRRLTPVVRDLKAGYDQTLAVLARMKREFP 193          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_NATPD (Probable lipoyl synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lipA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.823e-51
Identity = 98/184 (53.26%), Postives = 130/184 (70.65%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W++   P G ++ +IK+ LR+  L+TVCEEA CPNLG+CWSG + G  TAT M+LGD C+RGC FC+V T             NVAEA+A  GLDYVV+TSVDRDDL D G+GHFA+T+R++K    ++L+EAL+PDF+G+   V  +  +  +V AHN+ETVE LQ  VRD RA ++QSLDVL
Sbjct:   10 WLRTRPPSGRRFTEIKETLRDRDLNTVCEEANCPNLGDCWSGRD-GPGTATFMLLGDRCSRGCNFCDVATG-GMDPLDPDEPANVAEAVAEIGLDYVVLTSVDRDDLDDGGAGHFAETIREIKRRDTSVLVEALIPDFQGDTDAVDRIIDADPDVVAHNVETVERLQWPVRDRRAGYEQSLDVL 191          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_HALHL (Lipoyl synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=lipA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.218e-48
Identity = 100/201 (49.75%), Postives = 125/201 (62.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K   PGG+ Y  ++  + +  L TVCEE+ CPNLGECWS G     TAT M+LG  CTR CRFC+V T             + AE++   GL YVV+TSVDRDDL D G+ H+AQ VR +K   P+  +EAL PDFRG+   VR V  SGL VFAHN+E V  L   VRD RA ++QSL VL +AK   P G LT +S+
Sbjct:   44 WLKARAPGGEGYRSVRGIVHDHHLSTVCEESHCPNLGECWSHG-----TATFMVLGSVCTRTCRFCSVDTGNPKGRLDPQEPEHCAESVRLMGLRYVVLTSVDRDDLPDGGAEHYAQCVRAIKADNPDTAVEALTPDFRGDEEAVRTVVDSGLEVFAHNVEVVRRLSPQVRDPRAGYEQSLAVLQVAKRLRP-GVLTKSSL 238          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_THET8 (Lipoyl synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lipA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.203e-48
Identity = 99/201 (49.25%), Postives = 127/201 (63.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K  +P G +Y  +K  +REL+LHTVC+EA CPN+GECW+ G     T T+MILGD CTR C+FC V T              VAEAIA  G+ YVV+TSVDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G+   V  V  +   V+A N+ETV  L   VRD RA ++Q+L VL  AK   P   LT +S+
Sbjct:   42 WIKAPLPTGPRYQALKAMVRELRLHTVCQEALCPNIGECWTHG-----TLTVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQGDLKAVETVLAANPEVYAQNLETVRRLTPKVRDPRAGYEQTLKVLAHAKKVRP-DILTKSSL 236          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_THET2 (Lipoyl synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=lipA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.203e-48
Identity = 99/201 (49.25%), Postives = 127/201 (63.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K  +P G +Y  +K  +REL+LHTVC+EA CPN+GECW+ G     T T+MILGD CTR C+FC V T              VAEAIA  G+ YVV+TSVDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G+   V  V  +   V+A N+ETV  L   VRD RA ++Q+L VL  AK   P   LT +S+
Sbjct:   42 WIKAPLPTGPRYQALKAMVRELRLHTVCQEALCPNIGECWTHG-----TLTVMILGDICTRACKFCAVHTGNPKGLVDPEEPRRVAEAIARMGVRYVVLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQGDLKAVETVLAANPEVYAQNLETVRRLTPKVRDPRAGYEQTLKVLAHAKKVRP-DILTKSSL 236          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_DEIGD (Lipoyl synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=lipA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.169e-48
Identity = 99/201 (49.25%), Postives = 129/201 (64.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K +IP G  Y +++K ++E +LHTVCEEA CPN+GECWS G     TAT M++G  CTR CRFC V T             +VAE++   GL YVV+TSVDRDDL D G+ HFA+TV  +K   P   +EAL PDF GN  CV  V +SG++V+A N+ETV  L   VRD RA+++++L VL  AK   P   +T TSI
Sbjct:   30 WLKVTIPTGQVYGEVRKIVKEHRLHTVCEEAMCPNIGECWSRG-----TATFMLMGHICTRACRFCAVDTGNPMGKLDLEEPAHVAESVRLMGLKYVVLTSVDRDDLPDGGAYHFAKTVTAIKRENPGTRVEALTPDFGGNPHCVDLVLESGVDVYAQNLETVRRLTHPVRDIRASYERTLGVLKHAKQSRP-DVITKTSI 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SORC5 (Lipoyl synthase OS=Sorangium cellulosum (strain So ce56) GN=lipA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.597e-47
Identity = 95/189 (50.26%), Postives = 123/189 (65.08%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 830
            W+K   PGGD Y  +K+  R+L LHTVCEEA+CPN+GECW  G     TAT+M+LGD CTRGCRFC V T             +VA AIA   L YVV+T V+RDDL D G+ H A+TV +L  L+P++LIE LV DF+G+   V  V  +G +VFAHN+E V  +   +RD R+++ QSL VL  AK+
Sbjct:   10 WLKVRAPGGDTYHHLKETFRKLDLHTVCEEARCPNVGECWREG-----TATVMLLGDVCTRGCRFCAVTTGDPRGAVDVREPEHVARAIARLSLQYVVMTMVNRDDLLDGGAEHVARTVSRLHALRPDLLIETLVGDFQGHMSAVDMVVDAGPDVFAHNVEVVRRITRVIRDVRSSYDQSLAVLRRAKE 193          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_DEIRA (Lipoyl synthase OS=Deinococcus radiodurans GN=lipA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.724e-47
Identity = 95/201 (47.26%), Postives = 128/201 (63.68%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K +IP G  + +++K ++E +LHTVCEEA CPN+GECWS G     TAT M++G  CTR CRFC V T             +VA+++    L YVV+TSVDRDDL D G+ HFA+TV+ +KE+ P   +EAL PDF GN  CV  V  SG++ +A N+ETV  L   VRD RA++ ++L VL  AK   P   +T TS+
Sbjct:   33 WLKVTIPTGQVFTEVRKIVKEHRLHTVCEEAMCPNIGECWSRG-----TATFMLMGHICTRACRFCAVDTGNPMGKLDLDEPRSVADSVRLMDLKYVVLTSVDRDDLPDGGAYHFAKTVKAIKEVNPQTRVEALTPDFGGNTACVDLVLDSGVDTYAQNLETVRRLTHPVRDIRASYDRTLSVLAHAKQARP-DVITKTSL 227          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPL (Lipoyl synthase OS=Legionella pneumophila (strain Lens) GN=lipA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.069e-47
Identity = 95/190 (50.00%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  297 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            Y Q+K+++++ +L TVCEEAKCPN+ ECWS G     TATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SGL+VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LT TS+
Sbjct:   56 YSQVKEQVQKHRLATVCEEAKCPNISECWSHG-----TATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGLDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSL 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPH (Lipoyl synthase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lipA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.352e-46
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  297 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            Y Q+K+++++ +L TVCEEAKCPN+ ECWS G     TATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SG++VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LT TS+
Sbjct:   56 YSQVKEQVQKHRLATVCEEAKCPNISECWSHG-----TATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSL 239          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_ANADF4.798e-5251.04Lipoyl synthase OS=Anaeromyxobacter sp. (strain Fw... [more]
LIPA_NATPD1.823e-5153.26Probable lipoyl synthase OS=Natronomonas pharaonis... [more]
LIPA_HALHL3.218e-4849.75Lipoyl synthase OS=Halorhodospira halophila (strai... [more]
LIPA_THET84.203e-4849.25Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]
LIPA_THET24.203e-4849.25Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]
LIPA_DEIGD7.169e-4849.25Lipoyl synthase OS=Deinococcus geothermalis (strai... [more]
LIPA_SORC51.597e-4750.26Lipoyl synthase OS=Sorangium cellulosum (strain So... [more]
LIPA_DEIRA2.724e-4747.26Lipoyl synthase OS=Deinococcus radiodurans GN=lipA... [more]
LIPA_LEGPL6.069e-4750.00Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_LEGPH1.352e-4649.47Lipoyl synthase OS=Legionella pneumophila subsp. p... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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