FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:109..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPC (Lipoyl synthase OS=Legionella pneumophila (strain Corby) GN=lipA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.352e-46
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  297 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            Y Q+K+++++ +L TVCEEAKCPN+ ECWS G     TATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SG++VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LT TS+
Sbjct:   56 YSQVKEQVQKHRLATVCEEAKCPNISECWSHG-----TATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSL 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPA (Lipoyl synthase OS=Legionella pneumophila (strain Paris) GN=lipA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.352e-46
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 3
Query:  297 YVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            Y Q+K+++++ +L TVCEEAKCPN+ ECWS G     TATIM++G  CTR CRFC+V T             N AE +A   LDYVV+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SG++VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LT TS+
Sbjct:   56 YSQVKEQVQKHRLATVCEEAKCPNISECWSHG-----TATIMLMGAVCTRACRFCSVDTGNPHGWLDAEEPENTAETVALMNLDYVVLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSL 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PSEMY (Lipoyl synthase OS=Pseudomonas mendocina (strain ymp) GN=lipA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.012e-46
Identity = 91/201 (45.27%), Postives = 126/201 (62.69%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W++   PGG ++  +K+ + E +L TVC+E+ CPN+GECWS G     TATIM++G  CTR CRFC V T             N A+++    L Y+V+TSVDRDDL D G+ H+A  VR +KE  P +++EAL PDF G++  +  V  SGL VFA N+ETV+ L   VRD RA ++++L VL  AK + P   LT TS+
Sbjct:   46 WLRVKAPGGSRFEAVKRNVGEHRLSTVCQESHCPNMGECWSNG-----TATIMLMGSVCTRACRFCAVDTGNPNGWLDLEEPQNTAKSVELMALRYIVLTSVDRDDLEDGGASHYAACVRAIKENTPQVVVEALTPDFDGDHQAIERVVDSGLEVFAQNVETVKRLTHVVRDPRAGYEKTLKVLEHAKKHRPQ-VLTKTSL 240          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SULAC (Probable lipoyl synthase OS=Sulfolobus acidocaldarius GN=lipA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.138e-46
Identity = 93/187 (49.73%), Postives = 124/187 (66.31%), Query Frame = 3
Query:  291 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 851
            + + ++ + + E  + TVCEEA CPN+ ECW     G+ TAT MI+GD CTRGCRFC VK  +            VAEA+   GLDYVVITSVDRDDLAD G+ HF+Q V+ +KE+ P++++E L PDF GN   V +V  SG++VFAHN+ETV  L   VRD RA+++QSL VL  AK+ V   ++
Sbjct:   11 ENFKKLSRIVSEKGISTVCEEALCPNIMECW-----GSGTATFMIMGDICTRGCRFCYVKKGKPVLLDHEEPI-KVAEAVREMGLDYVVITSVDRDDLADGGASHFSQVVKAVKEMNPDVIVEVLTPDFMGNKELVEKVIGSGVDVFAHNVETVRSLTPLVRDARASYEQSLRVLSYAKNVVKKSSI 191          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_AERPE (Probable lipoyl synthase OS=Aeropyrum pernix GN=lipA PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.952e-45
Identity = 100/192 (52.08%), Postives = 124/192 (64.58%), Query Frame = 3
Query:  291 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            D YV++ + +  L + TVCE A CPN+  CW     G  TAT MI+GDTCTRGCRFC VK               VA A+ + GLDYV +TSVDRDDL D G+ HFA TVR +K L+P+ ++EAL+PDF+G    VR VA SGL V AHNIETVE L   VRD RA ++QSL VL +AK+    G +T +SI
Sbjct:   14 DSYVKVARLVAGLGVATVCEGALCPNIFTCW-----GEGTATFMIMGDTCTRGCRFCYVKKG-VPEPLDPLEPYKVALAVDALGLDYVTLTSVDRDDLPDGGASHFAATVRAIKRLRPDTIVEALIPDFQGVEEHVRLVAASGLEVLAHNIETVERLTPLVRDRRAGYRQSLRVLEIAKE---EGVVTKSSI 196          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_MARAV (Lipoyl synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=lipA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.330e-45
Identity = 89/201 (44.28%), Postives = 127/201 (63.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W++  +PGG++Y  +++ + E +L TVC+E+ CPN+GECW+ G     TATIM++G  CTR C+FC V T             N A+++   GL Y+V+TSVDRDDL D G+ H+A  V  +K+  P + +EAL PDF      V +V  SGL+VFA N+ETV+ L S VRD RA ++++L VL  AK + P   LT TS+
Sbjct:   46 WLRARMPGGERYDAVRRNVTEHRLSTVCQESHCPNIGECWTNG-----TATIMVMGSVCTRACKFCAVDTGNPKGWLDPEEPENTAKSVELMGLRYIVLTSVDRDDLPDGGAAHYAACVSAIKQRTPEVAVEALTPDFDAVMSDVEKVVDSGLDVFAQNVETVKRLTSRVRDPRAGYEKTLSVLAHAKKHRP-DVLTKTSL 240          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_MYXXD (Lipoyl synthase OS=Myxococcus xanthus (strain DK 1622) GN=lipA PE=3 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.653e-44
Identity = 89/201 (44.28%), Postives = 127/201 (63.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K  +P G+ Y ++K  ++  KL TVCEEA+CPN+ ECW GG     TAT+M++G+ CTR CRFC+VK   A          ++A+A+    L+Y+V+TSV+RDD  D G+ HFA  +R+L+   P  ++E L+PDF+G    +  VA++  +V AHN+ETVE L   VRD RA + QSL VL   K+  P G  T TS+
Sbjct:   10 WLKVRLPHGEGYERVKAIVKRTKLATVCEEARCPNIAECWGGG-----TATVMLMGEVCTRACRFCHVKVG-APPPLDPMEPIHLAQAVKEMDLEYIVVTSVNRDDRPDGGASHFASAIRELRRESPRTIVEVLIPDFKGVEKDLTTVAEAKPHVVAHNVETVERLTPTVRDRRAKYHQSLRVLEYLKNR-PEGLYTKTSV 203          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATW (Lipoyl synthase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATT (Lipoyl synthase OS=Francisella tularensis subsp. tularensis GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATO (Lipoyl synthase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_LEGPC1.352e-4649.47Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_LEGPA1.352e-4649.47Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_PSEMY3.012e-4645.27Lipoyl synthase OS=Pseudomonas mendocina (strain y... [more]
LIPA_SULAC5.138e-4649.73Probable lipoyl synthase OS=Sulfolobus acidocaldar... [more]
LIPA_AERPE1.952e-4552.08Probable lipoyl synthase OS=Aeropyrum pernix GN=li... [more]
LIPA_MARAV3.330e-4544.28Lipoyl synthase OS=Marinobacter aquaeolei (strain ... [more]
LIPA_MYXXD1.653e-4444.28Lipoyl synthase OS=Myxococcus xanthus (strain DK 1... [more]
LIPA_FRATW8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. t... [more]
LIPA_FRATT8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. t... [more]
LIPA_FRATO8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. h... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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