FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATN (Lipoyl synthase OS=Francisella tularensis subsp. novicida (strain U112) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATM (Lipoyl synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATH (Lipoyl synthase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRATF (Lipoyl synthase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRAT1 (Lipoyl synthase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=lipA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.202e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ KL TVCEEA+CPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++   GL+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G N  + ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVQKQDSKEYLKVKSITKKHKLSTVCEEARCPNINECWSHG-----TATIMLMGSVCTRACKFCSVDTGNPKGWLDKDEPMNAAESVKLMGLEYVVLTSVDRDDLEDGGAGHYAATITAIKNLDENIKVEALTPDFAGINENIDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLNFLKYVKQKSP-NVLTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SULSO (Probable lipoyl synthase OS=Sulfolobus solfataricus GN=lipA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.071e-43
Identity = 87/187 (46.52%), Postives = 123/187 (65.78%), Query Frame = 3
Query:  291 DKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTL 851
            + + ++ + +++  + TVCEEA CPN+ ECW     G+ TAT MI+G  CTRGCRFC V   +            VAEA+    LDYVVITSVDRDDL+D G+ HFA  V+ +KEL P +++E L PDFRGN   V++V  +G++VFAHN+ETV  L   VRD RA+++QSL+VL  A++ +   ++
Sbjct:   13 ENFKRVAEIVKKKSIATVCEEALCPNIMECW-----GSGTATFMIMGSICTRGCRFCYVLKGKPSPLDDEEPK-RVAEAVKEMELDYVVITSVDRDDLSDGGAQHFANVVKTVKELNPGIIVEVLTPDFRGNIDAVKKVIDAGVDVFAHNVETVRRLTPIVRDPRASYEQSLNVLKYAENVIKKSSI 193          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ALHEH (Lipoyl synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.069e-43
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W++  +P G+ Y  ++  +R  +L TVCEE+ CPN+GECW+ G     TATIM++G  CTR CRFC V T             + A+++   GL YVV+TSVDRDDL D G+GH+A  V  ++E+ P   +E L PDF G    V  V  +   VFA N+ETV  L   VRD RA ++Q+L+VL +AK   P   LT TS+
Sbjct:   45 WLRARVPSGEGYQAVRDIVRTHRLSTVCEESHCPNIGECWNAG-----TATIMLMGAVCTRACRFCAVDTGNPKGRLDHDEPAHAADSVRLMGLSYVVLTSVDRDDLEDGGAGHYAACVNAIREVNPETAVEVLTPDFNGVPEHVHRVVDARPEVFAQNVETVRRLTHPVRDPRAGYEQTLEVLRLAKARRP-DMLTKTSL 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_FRAP2 (Lipoyl synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=lipA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.020e-42
Identity = 90/201 (44.78%), Postives = 121/201 (60.20%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K       +Y+++K   ++ +L TVCEEAKCPN+ ECWS G     TATIM++G  CTR C+FC+V T             N AE++    L+YVV+TSVDRDDL D G+GH+A T+  +K L  N+ +EAL PDF G    V ++  + ++V A NIETVE L   VRD RA + Q+L+ L   K   P   LT TSI
Sbjct:   45 WLKVKKQDSKEYLKVKSITKKHRLSTVCEEAKCPNINECWSHG-----TATIMLMGAVCTRACKFCSVDTGNPKGWLDKEEPQNTAESVKLMNLEYVVLTSVDRDDLVDGGAGHYAATITAIKNLDENIKVEALTPDFAGVKENVDKIINTKVDVIAQNIETVERLTHPVRDPRAGYWQTLEFLRYVKQKSP-NILTKTSI 239          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PYRAR (Probable lipoyl synthase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=lipA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.639e-42
Identity = 85/189 (44.97%), Postives = 116/189 (61.38%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 830
            W++       +  +++  L  L ++TVCE A+CPN+  CW     G  TAT MILG+ CTR CRFC+V+T              VAEA+   GL YVV+TSVDRDDL D G+  +A  +R+++ L P  L+E L PDFRG+   V  VA++G +VFAHN+ETV  L   VRD RA+++ SL VL  AK+
Sbjct:    7 WLRVEARSYSEMAKVRSVLSRLGVYTVCEGARCPNVFRCW-----GEGTATFMILGEVCTRACRFCSVRTGNPRGYVDLDEPRRVAEAVRRLGLRYVVVTSVDRDDLPDGGAFQYASAIREIRRLAPGALVEVLTPDFRGSREAVETVAEAGPDVFAHNVETVRRLTPLVRDRRASYETSLRVLKTAKE 190          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ANAPZ (Lipoyl synthase OS=Anaplasma phagocytophilum (strain HZ) GN=lipA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.003e-41
Identity = 85/189 (44.97%), Postives = 120/189 (63.49%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 830
            W++  +PGG+ + +++  ++  +L+TVCEEA CPN+GECW+        ATIM++GD CTR C FCNVKT              V EAI+  GL +VVITSVDRDDL D G+ HFA+ +R++++  PN+ IE L PDF+G  G V  +A +  +V+ HN+ETV  L + VR  RA +  SL +L   KD
Sbjct:    7 WLRVKMPGGEVFEEVRDLVKRQRLNTVCEEAACPNIGECWNKRH-----ATIMVMGDVCTRACAFCNVKTG-VPRALDLGEPERVGEAISKLGLKHVVITSVDRDDLPDGGASHFAKCIREIRKRDPNVTIEILTPDFQGKPGAVDVIASARPDVYNHNLETVPRLYARVRP-RAKYFNSLQLLQQVKD 188          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_FRATN8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. n... [more]
LIPA_FRATM8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. m... [more]
LIPA_FRATH8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. h... [more]
LIPA_FRATF8.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. h... [more]
LIPA_FRAT18.202e-4445.27Lipoyl synthase OS=Francisella tularensis subsp. t... [more]
LIPA_SULSO4.071e-4346.52Probable lipoyl synthase OS=Sulfolobus solfataricu... [more]
LIPA_ALHEH9.069e-4343.78Lipoyl synthase OS=Alkalilimnicola ehrlichei (stra... [more]
LIPA_FRAP22.020e-4244.78Lipoyl synthase OS=Francisella philomiragia subsp.... [more]
LIPA_PYRAR2.639e-4244.97Probable lipoyl synthase OS=Pyrobaculum arsenaticu... [more]
LIPA_ANAPZ1.003e-4144.97Lipoyl synthase OS=Anaplasma phagocytophilum (stra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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