FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:109..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_UNCMA (Probable lipoyl synthase OS=Uncultured methanogenic archaeon RC-I GN=lipA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.976e-41
Identity = 86/192 (44.79%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W+K  +P  DKY  +K  +++  L+TVC  A CPN  ECW GG       T M+LG+TCTR CRFC V    A           +A A     L YVVITSVDRDDL D G+GH+A  +R +KE  P   +EA++PDF G    + +V  +  +V +HNIETVE L  +VRD RA + +SLDVL   K   P
Sbjct:   11 WLKVRLPRTDKYGAVKDVIKKYNLNTVCSSAMCPNAFECWDGG-----CLTFMVLGNTCTRACRFCTVTHGPAGEPLDSNEPQRLAAAAKELDLSYVVITSVDRDDLPDYGAGHYAACIRAVKEQLPGARVEAIIPDFTGRLDLLEQVVDARPDVISHNIETVERLSPSVRDRRAGYYRSLDVLRDVKRVNP 197          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PICTO (Probable lipoyl synthase OS=Picrophilus torridus GN=lipA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.499e-41
Identity = 90/186 (48.39%), Postives = 112/186 (60.22%), Query Frame = 3
Query:  270 KESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAK 827
            K  +P G++Y  IK  L    L+TVCEEA CPN+ ECW  G     TAT MI+G  C+RGCRFC V   R            V E++    LDYVVITSVDRDDL D+GS HFA  +R+LK+LK  + IE L+PDF G +  + ++     +V AHNIETV  L   VRD RA + QSL+VL   K
Sbjct:    9 KVKLPSGERYTFIKSTLSARNLYTVCEEAHCPNIAECWESG-----TATFMIMGSNCSRGCRFCAVTHGRMLPLDPMEPE-KVYESVKMMNLDYVVITSVDRDDLPDKGSSHFAAVIRRLKDLK--IKIEVLIPDFSGVHKFIDKIIDERPDVIAHNIETVRRLTKTVRDPRAGYDQSLNVLRYVK 186          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_RUBXD (Lipoyl synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=lipA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.186e-40
Identity = 89/197 (45.18%), Postives = 119/197 (60.41%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLT 854
            W+K  +P G  Y +IK+ +R L LHTVCEEA+CPN+GECW+       TAT MILG+ CTR C FC V T R            VA+A+   GL + VITSV+RD+L D G+  FA T+R ++   P   +E L PDF+G+   ++ V  +  + F HNIETV  L  AVR  +A + +SL+VL  AK+  P G LT
Sbjct:   36 WLKARVPDGPGYREIKETMRGLSLHTVCEEARCPNIGECWNN-----RTATFMILGNVCTRSCGFCAVLTGRPQELDLEEPY-RVADAVKKMGLRHAVITSVNRDELPDGGASVFAATIRAIRREVPGCAVEVLTPDFKGDRDAIKTVIDARPDTFNHNIETVPRLYPAVRP-QAKYGRSLEVLRYAKELDP-GVLT 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PYRCJ (Probable lipoyl synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=lipA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.385e-40
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 830
            W++       + V +++ +    +HT+CEEA CPN+  CW     G  TAT +ILGD CTR C+FC VKT              VAEA+A  GL YVVITSVDRDDL D G+  FA  V+ +K   P   +E L PDF G+   V  V ++G +V+AHN+ETV  L   VRD RA++  SL VL MAK+
Sbjct:    6 WIRVKAGDYGRIVAVREAVFAAGVHTICEEAHCPNIFSCW-----GEGTATFLILGDVCTRACKFCAVKTGDPRGFVDPTEPARVAEAVAKLGLRYVVITSVDRDDLPDGGASQFASVVKAVKARAPWAKVEVLTPDFGGSAEAVASVVEAGPDVYAHNLETVRRLTPLVRDRRASYDVSLRVLKMAKE 189          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_BACFN (Lipoyl synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=lipA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.385e-40
Identity = 82/184 (44.57%), Postives = 113/184 (61.41%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W+K SI   ++Y + K+ +    LHT+C   +CPN+GECW     G  TAT MI GD CTR C+FCN +T R          T+VAE+IA   L + VITSVDRDDL D G+ H+AQT+R++K L P    E L+PDF+G    V +V K+   + +HN+ETV+ +   VR   AN+  SL+V+
Sbjct:   12 WLKISIGANERYTETKRIVESHCLHTICSSGRCPNMGECW-----GKGTATFMIAGDICTRSCKFCNTQTGRPLPLDPDEP-THVAESIALMKLSHAVITSVDRDDLPDLGAAHWAQTIREIKRLNPETTTEVLIPDFQGRKELVDQVIKACPEIISHNMETVKRISPQVRS-AANYHTSLEVI 188          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_RICBR (Lipoyl synthase OS=Rickettsia bellii (strain RML369-C) GN=lipA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.091e-39
Identity = 86/192 (44.79%), Postives = 112/192 (58.33%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W+K   P   +Y   K  ++ LKL+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+   GL +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF   +G    +A +  +VF HN+ETV  L + +R   A +  SL +L   K   P
Sbjct:   59 WIKVKAPNSSEYYNTKDLIKNLKLNTVCEEAACPNIGECWSKKH-----ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLGLKHVVITSVDRDDLEDGGATHFAECISEIRKSSPNTTIEILTPDFLRKDGAAEIIANAKPDVFNHNVETVPSLYNTIRP-GARYYNSLSLLHNIKKLSP 243          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_RICB8 (Lipoyl synthase OS=Rickettsia bellii (strain OSU 85-389) GN=lipA PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.091e-39
Identity = 86/192 (44.79%), Postives = 112/192 (58.33%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W+K   P   +Y   K  ++ LKL+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+   GL +VVITSVDRDDL D G+ HFA+ + ++++  PN  IE L PDF   +G    +A +  +VF HN+ETV  L + +R   A +  SL +L   K   P
Sbjct:    7 WIKVKAPNSSEYYNTKDLIKNLKLNTVCEEAACPNIGECWSKKH-----ATVMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLGLKHVVITSVDRDDLEDGGATHFAECISEIRKSSPNTTIEILTPDFLRKDGAAEIIANAKPDVFNHNVETVPSLYNTIRP-GARYYNSLSLLHNIKKLSP 191          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PYRAE (Probable lipoyl synthase OS=Pyrobaculum aerophilum GN=lipA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.091e-39
Identity = 86/188 (45.74%), Postives = 114/188 (60.64%), Query Frame = 3
Query:  276 SIPGGD--KYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDY 833
            S+  GD  K + +++ L    ++TVCE AKCPN+  CW     G  TAT MILG+ CTR CRFC V+T              + EA+   GL YVV+TSV RDDL D G+  FA  V+KL+E+    ++E LVPDF G+   V+ V  SG +VFAHN+ETV  L   VRD RA +++SL VL  AK++
Sbjct:    7 SLRAGDYEKIINVRRALSRHGIYTVCEGAKCPNIFHCW-----GEGTATFMILGEVCTRACRFCAVRTGNPRGYVDWGEVDRLVEAVRELGLKYVVVTSVARDDLPDGGASVFAAVVKKLREV--GCVVEVLVPDFGGSPASVKTVVSSGPDVFAHNVETVRRLTPLVRDRRAGYERSLSVLKYAKEF 187          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAE (Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.091e-39
Identity = 93/193 (48.19%), Postives = 121/193 (62.69%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP 232          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAB (Lipoyl synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lipA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.091e-39
Identity = 93/193 (48.19%), Postives = 121/193 (62.69%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          TN+A AIA   L YVVITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP
Sbjct:   47 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVDEP-TNLAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP 232          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_UNCMA4.976e-4144.79Probable lipoyl synthase OS=Uncultured methanogeni... [more]
LIPA_PICTO6.499e-4148.39Probable lipoyl synthase OS=Picrophilus torridus G... [more]
LIPA_RUBXD7.186e-4045.18Lipoyl synthase OS=Rubrobacter xylanophilus (strai... [more]
LIPA_PYRCJ9.385e-4044.97Probable lipoyl synthase OS=Pyrobaculum calidifont... [more]
LIPA_BACFN9.385e-4044.57Lipoyl synthase OS=Bacteroides fragilis (strain AT... [more]
LIPA_RICBR2.091e-3944.79Lipoyl synthase OS=Rickettsia bellii (strain RML36... [more]
LIPA_RICB82.091e-3944.79Lipoyl synthase OS=Rickettsia bellii (strain OSU 8... [more]
LIPA_PYRAE2.091e-3945.74Probable lipoyl synthase OS=Pyrobaculum aerophilum... [more]
LIPA_PSEAE2.091e-3948.19Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA ... [more]
LIPA_PSEAB2.091e-3948.19Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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