FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOSM (Lipoyl synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOSE (Lipoyl synthase OS=Escherichia coli (strain SE11) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOLU (Lipoyl synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOLI (Lipoyl synthase OS=Escherichia coli (strain K12) GN=lipA PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOLC (Lipoyl synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOL6 (Lipoyl synthase OS=Escherichia coli O6 GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOL5 (Lipoyl synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOK1 (Lipoyl synthase OS=Escherichia coli O1:K1 / APEC GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOHS (Lipoyl synthase OS=Escherichia coli O9:H4 (strain HS) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ECOBW (Lipoyl synthase OS=Escherichia coli (strain K12 / BW2952) GN=lipA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.604e-31
Identity = 83/194 (42.78%), Postives = 108/194 (55.67%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++E  P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDANEP-VKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_ECOSM1.604e-3142.78Lipoyl synthase OS=Escherichia coli (strain SMS-3-... [more]
LIPA_ECOSE1.604e-3142.78Lipoyl synthase OS=Escherichia coli (strain SE11) ... [more]
LIPA_ECOLU1.604e-3142.78Lipoyl synthase OS=Escherichia coli O17:K52:H18 (s... [more]
LIPA_ECOLI1.604e-3142.78Lipoyl synthase OS=Escherichia coli (strain K12) G... [more]
LIPA_ECOLC1.604e-3142.78Lipoyl synthase OS=Escherichia coli (strain ATCC 8... [more]
LIPA_ECOL61.604e-3142.78Lipoyl synthase OS=Escherichia coli O6 GN=lipA PE=... [more]
LIPA_ECOL51.604e-3142.78Lipoyl synthase OS=Escherichia coli O6:K15:H31 (st... [more]
LIPA_ECOK11.604e-3142.78Lipoyl synthase OS=Escherichia coli O1:K1 / APEC G... [more]
LIPA_ECOHS1.604e-3142.78Lipoyl synthase OS=Escherichia coli O9:H4 (strain ... [more]
LIPA_ECOBW1.604e-3142.78Lipoyl synthase OS=Escherichia coli (strain K12 / ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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