FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALPK (Lipoyl synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALPC (Lipoyl synthase OS=Salmonella paratyphi C (strain RKS4594) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALPB (Lipoyl synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALPA (Lipoyl synthase OS=Salmonella paratyphi A GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALNS (Lipoyl synthase OS=Salmonella newport (strain SL254) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALHS (Lipoyl synthase OS=Salmonella heidelberg (strain SL476) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALG2 (Lipoyl synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALEP (Lipoyl synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALDC (Lipoyl synthase OS=Salmonella dublin (strain CT_02021853) GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
[Close]
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SALCH (Lipoyl synthase OS=Salmonella choleraesuis GN=lipA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 82/194 (42.27%), Postives = 107/194 (55.15%), Query Frame = 3 
Query:  264 WMKESIPGGDKYVQ-IKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            WMK  +P     +Q IK  +R+  LH+VCEEA CPNL EC++ G     TAT MILG  CTR C FC+V   R            +A+ IA   L YVVITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P
Sbjct:   40 WMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHG-----TATFMILGAICTRRCPFCDVAHGRPVAPDAEEPQ-KLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHP 226
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_SALPK1.040e-3042.27Lipoyl synthase OS=Salmonella paratyphi A (strain ... [more]
LIPA_SALPC1.040e-3042.27Lipoyl synthase OS=Salmonella paratyphi C (strain ... [more]
LIPA_SALPB1.040e-3042.27Lipoyl synthase OS=Salmonella paratyphi B (strain ... [more]
LIPA_SALPA1.040e-3042.27Lipoyl synthase OS=Salmonella paratyphi A GN=lipA ... [more]
LIPA_SALNS1.040e-3042.27Lipoyl synthase OS=Salmonella newport (strain SL25... [more]
LIPA_SALHS1.040e-3042.27Lipoyl synthase OS=Salmonella heidelberg (strain S... [more]
LIPA_SALG21.040e-3042.27Lipoyl synthase OS=Salmonella gallinarum (strain 2... [more]
LIPA_SALEP1.040e-3042.27Lipoyl synthase OS=Salmonella enteritidis PT4 (str... [more]
LIPA_SALDC1.040e-3042.27Lipoyl synthase OS=Salmonella dublin (strain CT_02... [more]
LIPA_SALCH1.040e-3042.27Lipoyl synthase OS=Salmonella choleraesuis GN=lipA... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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