FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:109..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_GEOUR (Lipoyl synthase OS=Geobacter uraniireducens (strain Rf4) GN=lipA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.774e-30
Identity = 75/192 (39.06%), Postives = 114/192 (59.38%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W+++ I     + ++++ L +L+LHTVC+EA CPN+ EC+   +     AT +ILG+ CTR C FCNV T ++           VA A+    L +VVITS  RDDL D G+G +AQTV  +++  P   IE L+PDF G++G +  V  +  ++  HN+ETV  L   +R   A++++SLDVL +  D  P
Sbjct:    9 WLQKKI-SPSAHAEMERLLGDLQLHTVCQEAHCPNISECFRSRQ-----ATFLILGNICTRLCSFCNV-TKQSPHHFDPDEPARVAAAVQKLQLSHVVITSPTRDDLPDGGAGLYAQTVTAIRKAAPQTAIELLIPDFMGDHGSIAAVVAACPDISGHNLETVPRLYH-IRS-GADYRRSLDVLKIIHDLDP 191          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_RALSO (Lipoyl synthase OS=Ralstonia solanacearum GN=lipA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 79/186 (42.47%), Postives = 107/186 (57.53%), Query Frame = 3
Query:  264 WMK-ESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W++ ++  G  ++ +IK  LR   L TVCEEA CPN+GEC+     G  TAT MI+GD CTR C FC+V   R           N+A+ IA   L+YVVITSVDRDDL D G+ H+   + + +EL P   IE LVPDFRG      ++ ++   +V  HN+ETV  L    R   A++  SL +L
Sbjct:   52 WIRVKAATGNSRFYEIKDILRANNLVTVCEEASCPNIGECF-----GKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDANEPE-NLAKTIAQLRLNYVVITSVDRDDLRDGGAQHYVDCISRTRELSPATRIEVLVPDFRGRLEKALDILQACPPDVMNHNMETVPRLYKQARP-GADYAHSLKLL 230          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_RALEJ (Lipoyl synthase OS=Ralstonia eutropha (strain JMP134) GN=lipA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 80/190 (42.11%), Postives = 107/190 (56.32%), Query Frame = 3
Query:  264 WMK-ESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAK 827
            W++ ++  G  ++ +IK  LR   L TVCEEA CPN+GEC+     G  TAT MI+GD CTR C FC+V   R           N+A  IA   L+YVVITSVDRDDL D G+ H+   + + +EL P   IE LVPDFRG      ++ ++   +V  HN+ETV  L    R   A++  SL +L   K
Sbjct:   50 WIRVKAATGNSRFYEIKDILRANNLVTVCEEASCPNIGECF-----GKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDVNEPG-NLARTIAQLKLNYVVITSVDRDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDILQACPPDVMNHNMETVPRLYKQARP-GADYAHSLKLLQEFK 232          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_GEOBB (Lipoyl synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=lipA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 75/193 (38.86%), Postives = 117/193 (60.62%), Query Frame = 3
Query:  264 WM-KESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W+ K+ IP    + +++  L+EL+L+TVC++A+CPN+ EC+     G   AT +ILG  CTR C FC+V +             +VAEA+   GL +VVITS  RDDL D G+  +A+TV +++ + P   +E L+PDFRG+   +  V +S  ++  HN+ETV  L S +R   A++++SLD+L  A+   P
Sbjct:    9 WLQKKIIPAA--HAEMEGLLKELRLNTVCQQARCPNITECF-----GKRQATFLILGRICTRLCSFCSV-SKETPLPLEPGEAASVAEAVKRLGLSHVVITSPTRDDLPDGGASVYAETVARIRSVSPATKVELLIPDFRGDWAALAAVVESAPDILGHNLETVPRLYS-IRS-GADYRRSLDLLAQARRMAP 191          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_CUPTR (Lipoyl synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=lipA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 80/190 (42.11%), Postives = 107/190 (56.32%), Query Frame = 3
Query:  264 WMK-ESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAK 827
            W++ ++  G  ++ +IK  LR   L TVCEEA CPN+GEC+     G  TAT MI+GD CTR C FC+V   R           N+A  IA   L+YVVITSVDRDDL D G+ H+   + + +EL P   IE LVPDFRG      ++ ++   +V  HN+ETV  L    R   A++  SL +L   K
Sbjct:   53 WIRVKAATGNSRFYEIKDILRANNLVTVCEEASCPNIGECF-----GKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDVNEPG-NLARTIAQLKLNYVVITSVDRDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDILQACPPDVMNHNMETVPRLYKQARP-GADYAHSLKLLQEFK 235          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA2_PROMA (Lipoyl synthase 2 OS=Prochlorococcus marinus GN=lipA2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 71/202 (35.15%), Postives = 111/202 (54.95%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN-------------VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKD 830
            W+K S+    +  +++  ++E +L+T+CEE +CPN GEC++ G     TAT ++ G  CTR C FC V+               VA+A+    L YVV+TSV RDDL D G+ HF++T+  +++  P   IE L PDF G  GC+ ++  + +               F HN+ETVE LQ  VR   A + +SL++L  +++
Sbjct:   22 WIKPSLGTASQLEKVQNLVKEYRLNTICEEGRCPNRGECYASG-----TATFLLGGSICTRSCAFCQVEKGMPPQNIDPNESIRVAKAVLKLQLKYVVLTSVARDDLDDHGAIHFSRTIHAIRKTSPTTSIEVLTPDFWG--GCIDKIKATKIQRERLKIVLKAKPVCFNHNLETVERLQKEVR-RGATYHRSLELLKASRE 215          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA1_PROMA (Lipoyl synthase 1 OS=Prochlorococcus marinus GN=lipA1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++   P  ++   +   L +L L+TVC+EA CPN+GEC++GG     TAT +I+G  CTR C +C++   ++           + EA+   GL +VVITSV+RDDL D G+  F   +  ++       IE L+PDF GN    ++V  +  NV  HNIETV  L    R  +  +K+SL++L   +   P
Sbjct:   11 WLRVKAPQHERIGYVADLLSDLNLNTVCQEASCPNIGECFAGG-----TATFLIMGPGCTRACPYCDIDFDKSVRSLDPSEPERLGEAVKRLGLKHVVITSVNRDDLEDGGASQFVSCIDAVRASSVETTIELLIPDFCGNWDAFKKVMNASPNVLNHNIETVPRLYKRARP-QGLYKRSLELLRRVRQESP 196          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA1_GLOVI (Lipoyl synthase 1 OS=Gloeobacter violaceus GN=lipA1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.952e-30
Identity = 69/184 (37.50%), Postives = 105/184 (57.07%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W++   P  ++   +K  LR+L L+TVCEEA CPN+GEC+  G     TAT +I+G  CTR C +C++   +            +A+A+   GL +VVITSV+RDDLAD G+  FA+ +  ++ + P   IE L+PDF G+   +  V  +   V  HN ETV  L   VR  + ++ ++L +L
Sbjct:    7 WLRVKAPQRERVGAVKDILRDLALNTVCEEASCPNIGECFKAG-----TATFLIMGPACTRACPYCDIDFEKYPKALDPTEPERLAQAVRRMGLRHVVITSVNRDDLADGGALQFARCIEAVRRVMPQTTIEVLIPDFCGSEAALDIVIAAHPQVINHNTETVPRLYRRVRP-QGDYGRTLQLL 184          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_LEIXX (Lipoyl synthase OS=Leifsonia xyli subsp. xyli GN=lipA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.161e-30
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K     G +Y Q+   ++   LHTVC+EA CPN+ ECW   E     AT +I G  CTR C FC + T +            VAE++A  GL Y  +T V RDDL D+G+  +A+T+R++    P   +E LVPDF G+   + EV  +   VFAHN+ETV  +   +R     +++SLDV+   +    AG +T +++
Sbjct:   28 WIKTRATMGPEYRQLHSLVKSEGLHTVCQEAGCPNIYECWEDRE-----ATFLIGGSQCTRRCDFCQIDTGKPAEFDRDEPR-RVAESVARMGLRYSTVTGVARDDLEDEGAWLYAETIREIHRQSPGTGVEILVPDFSGDPELLGEVFGARPEVFAHNVETVPRIFKRIRP-AFRYERSLDVIAQGR---AAGLITKSNL 218          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_CLAM3 (Lipoyl synthase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=lipA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.161e-30
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K +   G +Y  +++ ++   LHTVC+EA CPN+ ECW   E     AT +I G  CTR C FC + T +            VA+++   GL Y  +T V RDDL D+G+   A+TVR++    P   +E L  DF GN   + EV  S   VFAHN+ETV  +   +R     +++SLDV+  A+D   AG +T +++
Sbjct:   30 WIKTTARMGPEYQALQQLVKTEDLHTVCQEAACPNIYECWEDRE-----ATFLIGGSQCTRRCDFCQIDTGKPADYDTDEPR-RVADSVRRMGLRYATVTGVARDDLPDEGAWLHAETVRRIHADNPGTGVEILATDFSGNPDLLAEVFSSRPEVFAHNVETVPRIFKRIRP-AFRYERSLDVITQARD---AGLITKSNL 220          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_GEOUR1.774e-3039.06Lipoyl synthase OS=Geobacter uraniireducens (strai... [more]
LIPA_RALSO3.026e-3042.47Lipoyl synthase OS=Ralstonia solanacearum GN=lipA ... [more]
LIPA_RALEJ3.026e-3042.11Lipoyl synthase OS=Ralstonia eutropha (strain JMP1... [more]
LIPA_GEOBB3.026e-3038.86Lipoyl synthase OS=Geobacter bemidjiensis (strain ... [more]
LIPA_CUPTR3.026e-3042.11Lipoyl synthase OS=Cupriavidus taiwanensis (strain... [more]
LIPA2_PROMA3.026e-3035.15Lipoyl synthase 2 OS=Prochlorococcus marinus GN=li... [more]
LIPA1_PROMA3.026e-3035.94Lipoyl synthase 1 OS=Prochlorococcus marinus GN=li... [more]
LIPA1_GLOVI3.952e-3037.50Lipoyl synthase 1 OS=Gloeobacter violaceus GN=lipA... [more]
LIPA_LEIXX5.161e-3036.82Lipoyl synthase OS=Leifsonia xyli subsp. xyli GN=l... [more]
LIPA_CLAM35.161e-3036.82Lipoyl synthase OS=Clavibacter michiganensis subsp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
back to top