FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:109..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_NEIMB (Lipoyl synthase OS=Neisseria meningitidis serogroup B GN=lipA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.147e-37
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG  +  ++ +A++  +V  HN+ET   L    R   AN++ SLD+L   K+ +P
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPR-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARP-GANYQHSLDLLKRYKEMMP 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_NEIMA (Lipoyl synthase OS=Neisseria meningitidis serogroup A GN=lipA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.147e-37
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG  +  ++ +A++  +V  HN+ET   L    R   AN++ SLD+L   K+ +P
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARP-GANYQHSLDLLKRYKEMMP 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_NEIM0 (Lipoyl synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=lipA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.147e-37
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG  +  ++ +A++  +V  HN+ET   L    R   AN++ SLD+L   K+ +P
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPR-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARP-GANYQHSLDLLKRYKEMMP 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_NEIG2 (Lipoyl synthase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=lipA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.147e-37
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG  +  ++ +A++  +V  HN+ET   L    R   AN++ SLD+L   K+ +P
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARP-GANYQHSLDLLKRYKEMMP 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_NEIG1 (Lipoyl synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=lipA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.147e-37
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  +P   K+ +IK  LRE K+HTVCEEA CPN+GEC+S G     TAT MI+GD CTR C FC+V   R           N+AE++ +  L YVVITSVDRDDL D G+ HFA  ++ ++E  PN  IE LVPDFRG  +  ++ +A++  +V  HN+ET   L    R   AN++ SLD+L   K+ +P
Sbjct:   40 WIRAKLPSR-KFFEIKDILREQKMHTVCEEASCPNIGECFSKG-----TATFMIMGDICTRRCPFCDVGHGRPNMLDPDEPK-NLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPNTKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARP-GANYQHSLDLLKRYKEMMP 224          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_EHRCJ (Lipoyl synthase OS=Ehrlichia canis (strain Jake) GN=lipA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 81/188 (43.09%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAK 827
            W+K  +P GD + Q++  ++  KL+TVCEEA CPN+GECW+        AT+MILG TCTR C FCNV T             N+A+AI S  L +VVITSVDRDDL D G+GHF + + ++++   N+ IE L PDF   +G + ++A    +V+ HN+ETV  L + +R  +A +  SL +L   K
Sbjct:    7 WLKVKMPTGDTFYQMRNLMKLYKLNTVCEEAACPNVGECWNKKH-----ATVMILGSTCTRACAFCNVATG-IPDKLDPHEPQNLAKAINSLKLHHVVITSVDRDDLPDGGAGHFVECIEEIRKRDDNITIEILTPDFLNKHGAIDKIAAVAPDVYNHNVETVPRLYARIRP-KARYFHSLYLLKAVK 187          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_CALS8 (Lipoyl synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=lipA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 80/188 (42.55%), Postives = 114/188 (60.64%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAK 827
            W++  I       ++ K L++L LHTVC+EA+CPN+ EC+S       TAT +ILGD CTR C FC+VK  +            +AEA+    L YVV+TSV RDDL D G+ HFA  + K+KEL P   +E L+PDF G+   + +V  +  +V +HN+ETV  L   VR  +A++++SL VL +AK
Sbjct:    9 WLRIRIKANQSVEEVIKLLKDLSLHTVCQEAQCPNIFECFS-----KKTATFLILGDVCTRNCTFCDVKKGKPQEVDKNEPK-KIAEAVKVLNLSYVVVTSVTRDDLEDGGAEHFANVIEKIKELNPQTKVEVLIPDFNGDEKAIYKVVSARPDVLSHNVETVPRLYPTVRS-KADYERSLSVLKVAK 189          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_BACSK (Lipoyl synthase OS=Bacillus clausii (strain KSM-K16) GN=lipA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W+K  +   + Y  +KK +RE KLHTVCEEA+CPN+ ECW+  +T    AT MILGD CTRGCRFC VKT              VAE++ + GL +VVIT+V RDDL D G+  FA+TVR ++   P   IE L  D  GN   ++ +  +  N+  HNIETV  L   VR  RA + ++L+ L  AK+  P
Sbjct:   16 WLKIKLNTNESYTGLKKMMREKKLHTVCEEARCPNIHECWAVRKT----ATFMILGDICTRGCRFCAVKTG-LPTELDLQEPERVAESVETMGLKHVVITAVARDDLKDGGAAVFAETVRAVRRKNPFCTIEVLPSDMLGNESSLQTLMDARPNIMNHNIETVRRLTPKVR-ARAKYDRTLEFLRRAKEMHP 201          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_RICCK (Lipoyl synthase OS=Rickettsia canadensis (strain McKiel) GN=lipA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 83/188 (44.15%), Postives = 108/188 (57.45%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAK 827
            W+K   P   +Y   K  ++ L+L+TVCEEA CPN+GECWS        AT+MILG  CTR CRFCNVKT R            +AEA+    L +VVITSVDRDDL D G+ HFA+ + ++++  PN  +E L PDF    G    +A S  +VF HN+ETV  L   +R   A +  SL +L   K
Sbjct:   10 WIKVKAPNSVEYYNTKDLIKNLRLNTVCEEAACPNIGECWSKKH-----ATMMILGSVCTRACRFCNVKTGRPDLLDPHEPQ-RLAEAVQKLNLKHVVITSVDRDDLEDGGALHFAECINEIRKSSPNTTVEILTPDFLRKEGAAEIIAHSKPDVFNHNVETVPSLYKTIRP-GARYYNSLSLLHSIK 190          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_PSEU2 (Lipoyl synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lipA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 90/193 (46.63%), Postives = 118/193 (61.14%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVP 839
            W++  IP   +  +IK+ LR+ KLH+VCEEA CPNLGEC+SGG     TAT MI+GD CTR C FC+V   R          + +A AIA   L YVVITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  A R   ++++ SL +L   K  VP
Sbjct:   54 WIRVRIPVSPEVDRIKQLLRKHKLHSVCEEASCPNLGECFSGG-----TATFMIMGDICTRRCPFCDVGHGRPKPLDVNEPKS-LAIAIADLRLKYVVITSVDRDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGRMDVALEITAAEPPDVFNHNLETVPRLYKAARP-GSDYQWSLTLLQRFKQMVP 239          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_NEIMB1.147e-3745.60Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIMA1.147e-3745.60Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIM01.147e-3745.60Lipoyl synthase OS=Neisseria meningitidis serogrou... [more]
LIPA_NEIG21.147e-3745.60Lipoyl synthase OS=Neisseria gonorrhoeae (strain N... [more]
LIPA_NEIG11.147e-3745.60Lipoyl synthase OS=Neisseria gonorrhoeae (strain A... [more]
LIPA_EHRCJ1.498e-3743.09Lipoyl synthase OS=Ehrlichia canis (strain Jake) G... [more]
LIPA_CALS81.498e-3742.55Lipoyl synthase OS=Caldicellulosiruptor saccharoly... [more]
LIPA_BACSK1.498e-3744.79Lipoyl synthase OS=Bacillus clausii (strain KSM-K1... [more]
LIPA_RICCK2.556e-3744.15Lipoyl synthase OS=Rickettsia canadensis (strain M... [more]
LIPA_PSEU22.556e-3746.63Lipoyl synthase OS=Pseudomonas syringae pv. syring... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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