FC878113

Overview
NameFC878113
Unique NameFC878113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12189 contig Ccv1_Contig12189:10..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878113 vs. ExPASy Swiss-Prot
Match: C93A1_SOYBN (Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 56/215 (26.05%), Postives = 98/215 (45.58%), Query Frame = 2
Query:  209 LYKKGSKACSKPIPGPRGLPFIGSMSLMANLPHHNLXXXXXXXXXXRVMAFSLGETRVIITCSPNVAKEILNSSV--FADRP-----VKESAYSLMFNRAIGFAPYGVYWRTLRRIAATHLFCPKQINSAEPQRSDIASQMVSMIASYG--GSAFRLRDILKPASLNNMMCSVFGRKYALLGYSSNTEARRLSRLVEEGYDLLGKLNFSDHLPWL 826
            L++K SK  + P P P+ LP IG + L++ +PH +            +M   LG    ++  +   AKE L +    F++RP     VK  AY    +    FAP+G YW+ ++++  + L   + ++   P R     + +S +   G  G A    D L   S N +      +K +     ++ +A  + +LV    +L+GK N SD + +L
Sbjct:   20 LWRKQSKK-NLP-PSPKALPIIGHLHLVSPIPHQDFYKLSTRHGP--IMQLFLGSVPCVVASTAEAAKEFLKTHEINFSNRPGQNVAVKGLAYDSQ-DFLFAFAPFGPYWKFMKKLCMSELLSGRMMDQFLPVRQQETKRFISRVFRKGVAGEAVDFGDELMTLSNNIVSRMTLSQKTS----ENDNQAEEMKKLVSNIAELMGKFNVSDFIWYL 225          
BLAST of FC878113 vs. ExPASy Swiss-Prot
Match: C71BY_ARATH (Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=CYP71B37 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 55/207 (26.57%), Postives = 91/207 (43.96%), Query Frame = 2
Query:  215 KKGSKACSKPIPGPRGLPFIGSMSLMANLPHHNLXXXXXXXXXXRVMAFSLGETRVIITCSPNVAKEILNSSVF--ADRPVKESAYSLMFNRA-IGFAPYGVYWRTLRRIAATHLFCPKQINSAEPQRSDIASQMVSMIASYGGSAFRLRDILKPASLN-NMMC-SVFGRKYALLGYSSNTEARRLSRLVEEGYDLLGKLNFSDHLP 820
            KK  +   KP P P G P IG++  +  LPH +L           VM    G    ++  S   AK+ L         RP      +L +N   I F+P+  YW+ LRR+    LF PKQ++  +P R +   ++++  +        +    K ASL   ++C + FG  +   G   N++     +L+ + +  LG  + SD+ P
Sbjct:   23 KKRRQHQRKP-PSPPGFPIIGNLHQLGELPHQSLWSLSKKYGP--VMLLKFGSIPTVVVSSSETAKQALKIHDLNCCSRPSLAGPRALSYNYLDIVFSPFNDYWKELRRMCVQELFSPKQVHLIQPIREEEVKKLMNSFSESAAQKTPVNLSEKLASLTVGVICKAAFGVSFQ--GTVLNSD--NFDKLIHDAFLFLGSFSASDYFP 222          
BLAST of FC878113 vs. ExPASy Swiss-Prot
Match: C71B9_ARATH (Cytochrome P450 71B9 OS=Arabidopsis thaliana GN=CYP71B9 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 51/195 (26.15%), Postives = 87/195 (44.62%), Query Frame = 2
Query:  248 PGPRGLPFIGSMSLMANLPHHNLXXXXXXXXXXRVMAFSLGETRVIITCSPNVAKEIL--NSSVFADRPVKESAYSLMFNRA-IGFAPYGVYWRTLRRIAATHLFCPKQINSAEPQRSDIASQMVSMIASYGGSAFRLRDILKPASLNNMMCSVFGR-KYALLGYSSNTEARRLSRLVEEGYDLLGKLNFSDHLP 820
            P P G P IG++  +  LPH +L           VM   LG    ++  S   AK++L  N      RP    A  L +N   I F+P+  YW+ LRRI    LF  K+++S +P + +   ++  +I S   SA +   +       ++  SV  +  ++L  ++S        +L+ + +  LG  + S+  P
Sbjct:   33 PSPPGFPIIGNLHQLGELPHQSLWSLSKTYGP--VMLLKLGSVPTVVVSSSETAKQVLKINDLHCCSRPSLAGAKELSYNYLDIAFSPFDDYWKELRRICVQELFSAKRVHSIQPIKEE---EVRKLIVSATESASQKSPVNLSEKFLDLTVSVICKAAFSLDFHTSVLNNDGFDKLIHDAFLFLGSFSASNFFP 222          
BLAST of FC878113 vs. ExPASy Swiss-Prot
Match: C71B2_ARATH (Cytochrome P450 71B2 OS=Arabidopsis thaliana GN=CYP71B2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 57/202 (28.22%), Postives = 86/202 (42.57%), Query Frame = 2
Query:  248 PGPRGLPFIGSMSLMANLPH---HNLXXXXXXXXXXRVMAFSLGETRVIITCSPNVAKEIL--NSSVFADRPVKESAYSLMFN-RAIGFAPYGVYWRTLRRIAATHLFCPKQINSAEPQRSDIASQMVSMIASYGGSAFRLRDILKPASLNNMMCSVFGRKYALLGYSSN-----TEARRLSRLVEEGYDLLGKLNFSDHLP 820
            P P  LP IG++  +A LPH   H L          R     LG   V++  S   A+ +L  N      RP    +  L +  + I FAPYG YWR +R++A   LF  K++ S    R +    +V  ++    SA +   +    +  ++  S+  R    LG + N      +  R+  LV E  + LG   FSD  P
Sbjct:   33 PSPSSLPIIGNLHHLAGLPHRCFHKLSIKYGPLVFLR-----LGSVPVVVISSSEAAEAVLKTNDLECCSRPKTVGSGKLSYGFKDITFAPYGEYWREVRKLAVIELFSSKKVQSFRYIREEEVDFVVKKVSE---SALKQSPVDLSKTFFSLTASIICR--VALGQNFNESGFVIDQDRIEELVTESAEALGTFTFSDFFP 224          
BLAST of FC878113 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 56/214 (26.17%), Postives = 97/214 (45.33%), Query Frame = 2
Query:  203 KHLYKKGSKACSKPIPGPRGLPFIGSMSLMANLPHHNLXXXXXXXXXXRVMAFSLGETRVIITCSPNVAKEILNSS--VFADRPVKESAYSLMFN-RAIGFAPYGVYWRTLRRIAATHLFCPKQINSAEPQRSDIASQMVSMI--ASYGGSAFRLRDILKPASLNNMMCSVFGRKYALLGYSSNTEARRLSRLVEEGYDLLGKLNFSDHLPWLA 829
            K   K+ +K  + P P P  +P IG++  ++  PH +L           ++ F  G   +++  S   A EIL +    FA+RP  ++ + LM   R + F PYG YWR ++ +   +L   K + S E  R +  + M+  +  AS   SA  L ++    + +       G+K     Y  +  A  L + V +  +LL +    D++P LA
Sbjct:   21 KKFLKRTAKKVNLP-PSPWRIPVIGNLHQLSLHPHRSLHSLSLRYGPLMLLHF--GRVPILVVSSSEAAHEILKTHDLKFANRPKSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKVREEEVNAMMEKLEKASCSSSAENLSELFVTLTSDVTSRVSLGKK-----YWEDETAGGLKKRVRQIMELLREFPIGDYVPALA 226          
BLAST of FC878113 vs. ExPASy Swiss-Prot
Match: C71BC_ARATH (Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=CYP71B12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 44/198 (22.22%), Postives = 85/198 (42.93%), Query Frame = 2
Query:  248 PGPRGLPFIGSMSLMANLPHHNLXXXXXXXXXXRVMAFSLGETRVIITCSPNVAKEILNSSVF--ADRPVKESAYSLMFN-RAIGFAPYGVYWRTLRRIAATHLFCPKQINSAEPQRSDIASQMVSMIASYGGSAFRLRDILKPASLNNMMCSVFGRKYALLGYSSNTEARRLSRLVEE----GYDLLGKLNFSDHLP 820
            PGP  LP IG++  + + PH ++           +M+   G    ++  +P   KE+L +       RP       + +N + + F+PY  YWR +R++    L+  K++ S +  R +  + +V  I        +   + KP +LN  +  + G     + +  N +  +L    EE      +L+G    +D+ P
Sbjct:   31 PGPPRLPIIGNLHQLGSKPHRSMFKLSETYGP--LMSLKFGSVSTVVASTPETVKEVLKTFDVECCSRPNMTYPARVTYNLKDLCFSPYSKYWREVRKMTVVELYTAKRVQSFQHTRKEEVAALVDFIK-------QAASLEKPVNLNKKLMKLSGSVICRVAFGINLQGSKLENTYEEVIQGTVELVGSFAAADYFP 219          
The following BLAST results are available for this feature:
BLAST of FC878113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
C93A1_SOYBN5.044e-1126.05Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=... [more]
C71BY_ARATH5.044e-1126.57Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=C... [more]
C71B9_ARATH5.044e-1126.15Cytochrome P450 71B9 OS=Arabidopsis thaliana GN=CY... [more]
C71B2_ARATH6.588e-1128.22Cytochrome P450 71B2 OS=Arabidopsis thaliana GN=CY... [more]
C71AI_ARATH6.588e-1126.17Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]
C71BC_ARATH8.604e-1122.22Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA42CH07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878113 ID=FC878113; Name=FC878113; organism=Citrus clementina; type=EST; length=829bp
AAAAAAAAAAAAAAACGTAATCGCTGCAAATACTTCAATGGAATCTAAGA
TAGACTGTTTCTGGGTTTTGGCTCTTGCTTCCAAATGCAAATCTTTAACA
TTCCAAAACAATATTTTGGCGTCTATTTTACTTTGCATGGCTTTGTTTTG
GCTAGCCATGGCTTTGTGTTTCTGGGCACACCCTGGAGGCCATGCCTGGG
GTAAGCACTTATACAAGAAAGGCAGCAAAGCCTGCAGTAAGCCAATACCT
GGACCCCGAGGGTTACCATTTATTGGAAGCATGAGCCTCATGGCTAACCT
ACCTCACCACAACCTGGCTGCGGCAGCAAAAGCTTATAAAGCTAAACGGG
TCATGGCTTTTAGCCTCGGTGAGACTCGGGTTATTATTACATGCAGTCCA
AATGTGGCTAAAGAGATACTAAACAGCTCGGTATTTGCTGATCGTCCTGT
AAAAGAGTCTGCTTATAGTTTAATGTTCAATAGAGCAATAGGGTTTGCTC
CTTATGGAGTTTACTGGCGAACCCTAAGAAGAATCGCTGCAACTCATCTC
TTTTGTCCCAAGCAAATCAACTCCGCTGAGCCACAAAGGTCCGATATCGC
TTCCCAAATGGTCTCGATGATTGCATCTTACGGCGGATCAGCTTTTCGTC
TTCGTGACATACTAAAGCCAGCTTCGCTTAATAACATGATGTGTTCAGTG
TTTGGTCGCAAGTACGCCCTGCTGGGTTATTCTTCTAATACTGAAGCCCG
TCGACTGAGCCGCCTTGTTGAAGAAGGCTATGACCTGCTAGGAAAGCTCA
ATTTCTCTGATCACCTCCCTTGGCTTGCT
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