FC878121

Overview
NameFC878121
Unique NameFC878121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878121_ssr208 microsatellite FC878121_ssr208:208..219. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr572 microsatellite FC878121_ssr572:572..592. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr656 microsatellite FC878121_ssr656:656..667. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr668 microsatellite FC878121_ssr668:668..682. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr1 microsatellite FC878121_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5069 contig Ccv1_Contig5069:51..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 2
Query:  251 QNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            +  QAL CPRC+SLNTKFCYYNNY+L+QPR+FCK+CRRYWT GG LRN+PVGGG RK KRSS    +S  S+
Sbjct:   44 EKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSSNSSSSSPSS 115          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  245 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            P Q    LKCPRCDS NTKFCYYNNY+LSQPRHFCK C+RYWT+GG LRNVPVGG  RK KR  +P   + ++A
Sbjct:   20 PQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVKRPSTATTTTA 93          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF32_ARATH (Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.323e-25
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  245 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 436
            P    Q+L+CPRCDS NTKFCYYNNY+LSQPR+FCK+CRRYWTKGG+LRN+P+GG  RK KRSS
Sbjct:   33 PAPPEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSS 96          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.728e-25
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 436
            +A  CPRC+S NTKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRNVPVGGGCR+ KRSS
Sbjct:   46 EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSS 104          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF51_ARATH (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.028e-25
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 2
Query:  263 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 433
            ALKCPRCDS NTKFCY+NNY+L+QPRHFCK CRRYWT+GG LR+VPVGGGCR+ KR+
Sbjct:   94 ALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRT 150          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF34_ARATH (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 8.577e-25
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            + L CPRCDS NTKFCYYNNYN SQPRHFCK CRRYWT GG LR+VPVGGG RK+ + S+   NS SS+
Sbjct:   28 EQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKSAKRSRTCSNSSSSS 96          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.257e-24
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 2
Query:  263 ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 433
            AL CPRCDS NTKFCY+NNY+L+QPRHFCK CRRYWT+GG LRNVPVGGG R+ KRS
Sbjct:   75 ALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKRS 131          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 2
Query:  251 QNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 433
            +  QA+ CPRC+S NTKFCYYNNY+L+QPR+FCK CRRYWT+GG LRN+PVGGG RK KRS
Sbjct:   48 EKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRS 108          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.483e-24
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            CPRC S NTKFCYYNNY+L+QPR+FCK CRRYWTKGG LRNVPVGGGCRK++R      N+  ++
Sbjct:   27 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRPKSSSGNNTKTS 91          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF47_ARATH (Dof zinc finger protein DOF4.7 OS=Arabidopsis thaliana GN=DOF4.7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.618e-23
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKP 442
            LKCPRCDS+NTKFCYYNNY+LSQPRH+CKNCRRYWT+GG LRNVP+GG    T+  +KP
Sbjct:   41 LKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPIGG---STRNKNKP 96          
The following BLAST results are available for this feature:
BLAST of FC878121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF18_ARATH7.758e-2669.44Dof zinc finger protein DOF1.8 OS=Arabidopsis thal... [more]
DOF14_ARATH7.758e-2667.57Dof zinc finger protein DOF1.4 OS=Arabidopsis thal... [more]
DOF32_ARATH1.323e-2575.00Dof zinc finger protein DOF3.2 OS=Arabidopsis thal... [more]
DOF21_ARATH1.728e-2581.36Dof zinc finger protein DOF2.1 OS=Arabidopsis thal... [more]
DOF51_ARATH5.028e-2580.70Dof zinc finger protein DOF5.1 OS=Arabidopsis thal... [more]
DOF34_ARATH8.577e-2571.01Dof zinc finger protein DOF3.4 OS=Arabidopsis thal... [more]
DOF36_ARATH4.257e-2480.70Dof zinc finger protein DOF3.6 OS=Arabidopsis thal... [more]
DOF46_ARATH7.261e-2473.77Dof zinc finger protein DOF4.6 OS=Arabidopsis thal... [more]
DOF35_ARATH9.483e-2469.23Dof zinc finger protein DOF3.5 OS=Arabidopsis thal... [more]
DOF47_ARATH1.618e-2376.27Dof zinc finger protein DOF4.7 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878121 ID=FC878121; Name=FC878121; organism=Citrus clementina; type=EST; length=869bp
CTTTCTTTCTTTCATGTTTCTGTTTTTTATCATTTTGTTGAAAATACAAC
AAATGTGAACGACGGTTTTTTTTTTCCTTCCCAGTAAATCCTAACAGCTA
GATTAATCAAAATCTTTCTGTTTCGTCTTAATTGCAAAGAAAAACTTATC
TAAACAGCACTTGTACGGAATGCAAGACATCCACTCAATCGGCGGAGGAA
GGTTATTCGGCGGCGGCGGTGGTGACAGGCGGCTACGGCCTCATCCCCAC
CAGAACCACCAGGCTCTGAAGTGCCCGCGTTGTGACTCTCTAAACACAAA
ATTCTGTTATTACAACAACTACAATCTATCCCAGCCCCGCCACTTCTGCA
AGAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTGCGTAACGTCCCC
GTCGGAGGAGGCTGCCGGAAGACCAAGCGTAGCTCAAAGCCGAAACCCAA
CTCAGAATCATCAGCTCAAACGCAAACGCAGACACAAACCGAAGCGCCAG
CTGCTGGGGAAAGAGATCGTAAGGCGAACTCTCATTCGAGTAGTGAAAGC
TCTAGCACTCTCACCGTCACGAATAATAATAATAATAATAATACGAGTGT
TGAAACTGTGTCCGTGCATTCTTCGAGTTCAGTGTCGAATGTGTTGAGTG
CCATGAACAACAACAACAATAATAATAATAATGATCCTGGTTTTGAGACT
GCACCGACTACTGCTTTGCTCGATCAGGCATCGTCTGATTGCGGGATATT
TTCGGAAATTGGGAGTTTCACGAGTCTGATTACATCCTCGAATGAAGCTT
TGCCTTTTGGGTTCAGTAATCTGTTGAATAATGCTCAGCAAAATCTTGAG
CATGTTCAAAATGAGCAGC
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