FC878121

Overview
NameFC878121
Unique NameFC878121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878121_ssr208 microsatellite FC878121_ssr208:208..219. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr572 microsatellite FC878121_ssr572:572..592. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr656 microsatellite FC878121_ssr656:656..667. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr668 microsatellite FC878121_ssr668:668..682. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878121_ssr1 microsatellite FC878121_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5069 contig Ccv1_Contig5069:51..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.113e-23
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKP 442
            + + CPRC+S NTKFCYYNNY+L+QPR+FCK CRRYWT+GG LRNVPVGG  RK KRSS P
Sbjct:   72 EKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSTP 132          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.113e-23
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 433
            CPRC S NTKFCYYNNY+LSQPR+FCK CRRYWTKGG LRN+PVGGGCRK  RS
Sbjct:   40 CPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 93          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: MNB1A_MAIZE (Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 51/81 (62.96%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSAXXXXXXXXEAPAAGER 514
            CPRC S +TKFCYYNNYN SQPRHFCK CRRYWTKGG LRNVPVGGG RK K SS    +S  +A        + PA+ +R
Sbjct:   49 CPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRK-KPSSSSSSSSYVAAADADRQPKKKPASKKR 128          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 436
            + L CPRC+S NTKFCYYNNY+L+QPR+FCK CRRYWT+GG LRNVPVGG  RK KRSS
Sbjct:   78 EKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 136          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF58_ARATH (Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.028e-23
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  245 PHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSK 439
            P    + L CPRC+S NTKFCYYNNYN SQPRHFCK+CRRYWT GG LR++PVGG  RK+ + S+
Sbjct:   25 PTDQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSR 89          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.369e-22
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSESSA 466
            CPRC+S NTKFCYYNNY+L+QPR+ CK+CRRYWT+GG LRNVPVGGG RK K+   P PNS +S+
Sbjct:   70 CPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK--LPFPNSSTSS 132          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF44_ARATH (Dof zinc finger protein DOF4.4 OS=Arabidopsis thaliana GN=DOF4.4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.788e-22
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKR 430
            CPRCDS NTKFC+YNNY+ SQPR+FCKNCRRYWT GG LRN+PVGG CRK KR
Sbjct:   26 CPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGGSCRKPKR 78          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF16_ARATH (Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana GN=DOF1.6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  260 QALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCR----KTKRSSKPKPNSESSAXXXXXXXXEAPAAGE 511
            + L CPRC+S  TKFCYYNNYNL+QPR++CK+CRRYWT+GG LR+VPVGGG R    K  RS      S SS+        + PA  E
Sbjct:   27 EPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCRRYWTQGGTLRDVPVGGGTRRSSSKRHRSFSTTATSSSSSSSVITTTTQEPATTE 114          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF33_ARATH (Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.977e-21
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 436
            L CPRC S+ TKFCYYNNYN++QPRHFCK C+RYWT GG +RNVPVG G RK K SS
Sbjct:  110 LPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 166          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF52_ARATH (Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.753e-21
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTK 427
            L CPRC+S+ TKFCYYNNYN++QPRHFCK C+RYWT GG +RNVPVG G RK K
Sbjct:  138 LPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNK 191          
The following BLAST results are available for this feature:
BLAST of FC878121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF37_ARATH2.113e-2373.77Dof zinc finger protein DOF3.7 OS=Arabidopsis thal... [more]
DOF12_ARATH2.113e-2383.33Dof zinc finger protein DOF1.2 OS=Arabidopsis thal... [more]
MNB1A_MAIZE4.706e-2362.96Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A... [more]
DOF25_ARATH4.706e-2376.27Dof zinc finger protein DOF2.5 OS=Arabidopsis thal... [more]
DOF58_ARATH8.028e-2366.15Dof zinc finger protein DOF5.8 OS=Arabidopsis thal... [more]
DOF41_ARATH1.369e-2270.77Dof zinc finger protein DOF4.1 OS=Arabidopsis thal... [more]
DOF44_ARATH1.788e-2281.13Dof zinc finger protein DOF4.4 OS=Arabidopsis thal... [more]
DOF16_ARATH1.159e-2154.55Dof zinc finger protein DOF1.6 OS=Arabidopsis thal... [more]
DOF33_ARATH1.977e-2173.68Dof zinc finger protein DOF3.3 OS=Arabidopsis thal... [more]
DOF52_ARATH5.753e-2174.07Dof zinc finger protein DOF5.2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878121 ID=FC878121; Name=FC878121; organism=Citrus clementina; type=EST; length=869bp
CTTTCTTTCTTTCATGTTTCTGTTTTTTATCATTTTGTTGAAAATACAAC
AAATGTGAACGACGGTTTTTTTTTTCCTTCCCAGTAAATCCTAACAGCTA
GATTAATCAAAATCTTTCTGTTTCGTCTTAATTGCAAAGAAAAACTTATC
TAAACAGCACTTGTACGGAATGCAAGACATCCACTCAATCGGCGGAGGAA
GGTTATTCGGCGGCGGCGGTGGTGACAGGCGGCTACGGCCTCATCCCCAC
CAGAACCACCAGGCTCTGAAGTGCCCGCGTTGTGACTCTCTAAACACAAA
ATTCTGTTATTACAACAACTACAATCTATCCCAGCCCCGCCACTTCTGCA
AGAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTGCGTAACGTCCCC
GTCGGAGGAGGCTGCCGGAAGACCAAGCGTAGCTCAAAGCCGAAACCCAA
CTCAGAATCATCAGCTCAAACGCAAACGCAGACACAAACCGAAGCGCCAG
CTGCTGGGGAAAGAGATCGTAAGGCGAACTCTCATTCGAGTAGTGAAAGC
TCTAGCACTCTCACCGTCACGAATAATAATAATAATAATAATACGAGTGT
TGAAACTGTGTCCGTGCATTCTTCGAGTTCAGTGTCGAATGTGTTGAGTG
CCATGAACAACAACAACAATAATAATAATAATGATCCTGGTTTTGAGACT
GCACCGACTACTGCTTTGCTCGATCAGGCATCGTCTGATTGCGGGATATT
TTCGGAAATTGGGAGTTTCACGAGTCTGATTACATCCTCGAATGAAGCTT
TGCCTTTTGGGTTCAGTAATCTGTTGAATAATGCTCAGCAAAATCTTGAG
CATGTTCAAAATGAGCAGC
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