FC878121

Overview
NameFC878121
Unique NameFC878121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF55_ARATH (Dof zinc finger protein DOF5.5 OS=Arabidopsis thaliana GN=DOF5.5 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 436
            L CPRC+S+ TKFCYYNNYN++QPRHFCK C+RYWT GG +R+VP+G G RK K +S
Sbjct:   54 LPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNKNNS 110          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF1A_ARATH (Dof zinc finger protein DOF1.10 OS=Arabidopsis thaliana GN=DOF1.10 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.282e-20
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTK 427
            + CPRC+S NTKFCYYNNYN++QPR+FC+NC+RYWT GG +RNVPVG G RK K
Sbjct:  132 IPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNK 185          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF15_ARATH (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTK 427
            + CPRC S+ TKFCY+NNYN++QPRHFCK C+RYWT GG LRNVPVG G RK+K
Sbjct:   62 IPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF23_ARATH (Dof zinc finger protein DOF2.3 OS=Arabidopsis thaliana GN=DOF2.3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.855e-20
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTK 427
            + CPRC S+ TKFCY+NNYN++QPRHFCK C RYWT GG LRNVPVG G RK+K
Sbjct:   58 IACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF13_ARATH (Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  266 LKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTK 427
            L CPRC+S +TKFCYYNNYN++QPRHFC+ C+RYWT GG +R VPVG G RK K
Sbjct:  105 LPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNK 158          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF43_ARATH (Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.033e-19
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCR-KTKRSSKP 442
            C RCDS NTKFCYYNNY+  QPR+FCKNCRRYWT GG LRNVP+GG  R K  R ++P
Sbjct:   27 CARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGGSSRAKRTRINQP 84          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF45_ARATH (Dof zinc finger protein DOF4.5 OS=Arabidopsis thaliana GN=DOF4.5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.672e-18
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCR-KTKRSSKP 442
            C RCDS NTKFCYYNNY   QPR+FCKNCRRYWT GG LRN+P+GG  R K  R ++P
Sbjct:   27 CARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWTHGGALRNIPIGGSSRAKRARVNQP 84          
BLAST of FC878121 vs. ExPASy Swiss-Prot
Match: DOF42_ARATH (Dof zinc finger protein DOF4.2 OS=Arabidopsis thaliana GN=DOF4.2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 2
Query:  272 CPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSKPKPNSES 460
            CPRC S  T+F Y+NN   SQPR+ CKNC R WT GGVLRN+PV G C K   S+ PK +  S
Sbjct:   23 CPRCYSDQTRFSYFNNNKKSQPRYKCKNCCRCWTHGGVLRNIPVTGICDK---SNLPKIDQSS 82          
The following BLAST results are available for this feature:
BLAST of FC878121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF55_ARATH9.813e-2168.42Dof zinc finger protein DOF5.5 OS=Arabidopsis thal... [more]
DOF1A_ARATH1.282e-2072.22Dof zinc finger protein DOF1.10 OS=Arabidopsis tha... [more]
DOF15_ARATH2.186e-2072.22Dof zinc finger protein DOF1.5 OS=Arabidopsis thal... [more]
DOF23_ARATH2.855e-2072.22Dof zinc finger protein DOF2.3 OS=Arabidopsis thal... [more]
DOF13_ARATH4.123e-1970.37Dof zinc finger protein DOF1.3 OS=Arabidopsis thal... [more]
DOF43_ARATH7.033e-1970.69Dof zinc finger protein DOF4.3 OS=Arabidopsis thal... [more]
DOF45_ARATH2.672e-1868.97Dof zinc finger protein DOF4.5 OS=Arabidopsis thal... [more]
DOF42_ARATH9.836e-1357.14Dof zinc finger protein DOF4.2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878121 ID=FC878121; Name=FC878121; organism=Citrus clementina; type=EST; length=869bp
CTTTCTTTCTTTCATGTTTCTGTTTTTTATCATTTTGTTGAAAATACAAC
AAATGTGAACGACGGTTTTTTTTTTCCTTCCCAGTAAATCCTAACAGCTA
GATTAATCAAAATCTTTCTGTTTCGTCTTAATTGCAAAGAAAAACTTATC
TAAACAGCACTTGTACGGAATGCAAGACATCCACTCAATCGGCGGAGGAA
GGTTATTCGGCGGCGGCGGTGGTGACAGGCGGCTACGGCCTCATCCCCAC
CAGAACCACCAGGCTCTGAAGTGCCCGCGTTGTGACTCTCTAAACACAAA
ATTCTGTTATTACAACAACTACAATCTATCCCAGCCCCGCCACTTCTGCA
AGAACTGCCGCCGTTACTGGACCAAAGGCGGCGTCCTGCGTAACGTCCCC
GTCGGAGGAGGCTGCCGGAAGACCAAGCGTAGCTCAAAGCCGAAACCCAA
CTCAGAATCATCAGCTCAAACGCAAACGCAGACACAAACCGAAGCGCCAG
CTGCTGGGGAAAGAGATCGTAAGGCGAACTCTCATTCGAGTAGTGAAAGC
TCTAGCACTCTCACCGTCACGAATAATAATAATAATAATAATACGAGTGT
TGAAACTGTGTCCGTGCATTCTTCGAGTTCAGTGTCGAATGTGTTGAGTG
CCATGAACAACAACAACAATAATAATAATAATGATCCTGGTTTTGAGACT
GCACCGACTACTGCTTTGCTCGATCAGGCATCGTCTGATTGCGGGATATT
TTCGGAAATTGGGAGTTTCACGAGTCTGATTACATCCTCGAATGAAGCTT
TGCCTTTTGGGTTCAGTAATCTGTTGAATAATGCTCAGCAAAATCTTGAG
CATGTTCAAAATGAGCAGC
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