FC878125

Overview
NameFC878125
Unique NameFC878125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  606 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            SD   WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  + I TY   HNHP P    ++A +T
Sbjct:  297 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTT 367          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  606 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            SD   WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  + I TY   HNHP P    ++A +T
Sbjct:  312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTT 382          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  606 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAP-----THRNSL 806
            +D + WRKYGQK +KGSPYPR YYRC SS GC  +K VER+  D  + I TY  +H+H  P     TH N L
Sbjct:  307 NDGYRWRKYGQKSVKGSPYPRSYYRC-SSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVVTHNNML 377          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  606 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            SD   WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  + I TY   HNHP P    ++A +T
Sbjct:  292 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTT 362          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  600 LSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNS 803
            L  D + WRKYGQK +KG+PYPR YY+C ++ GC  RK VER  +DP   + TY  +HNH  P  ++S
Sbjct:  407 LLDDGYRWRKYGQKVVKGNPYPRSYYKC-TTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSS 473          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  606 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGS 815
            +D   WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  + I TY   HNHP P    ++A +
Sbjct:  235 NDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMAST 304          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAP 788
            D + WRKYGQKP+K SP+PR YYRC+++  C  +K+VER+ SDP   I TY  +H HP P
Sbjct:  119 DGYKWRKYGQKPVKDSPFPRNYYRCTTT-WCDVKKRVERSFSDPSSVITTYEGQHTHPRP 177          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  600 LSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            L  D + WRKYGQK +KG+P+PR YY+C ++  C  RK VER  +D    I TY  +HNH  P  RN  A +T
Sbjct:  304 LLDDGYRWRKYGQKVVKGNPHPRSYYKC-TTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAAT 375          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 3
Query:  606 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            +D   WRKYGQK  KG+P PR YYRC+ + GC  RKQV+R   D  +   TY   HNHP P    ++A +T
Sbjct:  239 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATT 309          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAP 788
            D + WRKYGQK +K SPYPR YYRC ++ GC  +K+VER+  DP + + TY  +H HP P
Sbjct:  222 DGYRWRKYGQKAVKNSPYPRSYYRC-TTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFP 280          
The following BLAST results are available for this feature:
BLAST of FC878125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
WRK31_ARATH7.333e-1550.70Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRKY6_ARATH1.251e-1450.70WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRKY1_ARATH1.634e-1452.78WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK42_ARATH2.134e-1450.70Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY4_ARATH4.753e-1450.00Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY9_ARATH6.208e-1448.57Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK68_ARATH6.208e-1455.00Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK58_ARATH6.208e-1447.95Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK47_ARATH6.208e-1447.89Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK48_ARATH1.059e-1353.33Probable WRKY transcription factor 48 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878125 ID=FC878125; Name=FC878125; organism=Citrus clementina; type=EST; length=819bp
TCATAAGTCAGCGCCTTCTTTTGTCTCTGTCTCTTTCCCTTTTCCTTTCT
CTTAACAGAAGTACCAGACGAGAGGGTACAGATTCACAGCGCTTTTGTCT
CTTGAAGGCTAGCGAAGAGCCATGGAAGTTGACTGGGATCTGCATGCGGT
GGTCAGAGGCTGCAACAGCTCCGTTAACGCCACCGTTACAACAACTACAG
CCACCACCACAAGTACCACCACAAGTTTCAAGGATGATTTAGATACTACT
AATTCAATCTTGGTTTTCGGTTTCTCCATTTAGCCGTGAACAAACCAGTG
GTCATCTTTTCACCTTGGCCGATCCTTTCGAAGCAAGAAATGCTATTGAA
GAGCTGCATGAACTTTATAAGCCATTCTTTCCCAAATCTCCTCAGCCTAT
TTCTCCCAAAAGTAGTCAACCCATCTCGTCTTCTATTTCTTCTATCAATT
CATCATCATCAAAGGAACAGACTCAGTTCAAACAGCAGCAGCCTAATAAT
AAGCAGTCTCATGCTAGTTCTGTCACTAGTTCCACAACTCCTCGAACCAA
AAGAAGAAAGAATCAGCTCAAGAGAGTTTGTCATGTCCCAGCTGAAGGTC
TCTCTTCCGACGTTTGGGCTTGGAGAAAATATGGCCAAAAACCCATTAAA
GGCTCCCCCTATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTG
CTTGGCCCGGAAACAAGTGGAGCGAAACAGATCCGACCCCGGTATGTTCA
TAGTAACATATACGGCAGAGCACAACCACCCAGCTCCCACTCACAGAAAC
TCACTCGCCGGAAGCACCC
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