FC878125

Overview
NameFC878125
Unique NameFC878125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK41_ARATH (Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.766e-11
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  594 EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCS--SSKGCLARKQVERNRSDPGMFIVTYTAEH 773
            EG   D+++WRKYGQK I G+ +PR YYRC+  +++ C A KQV+R+  DP +F VTY   H
Sbjct:  137 EGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDGDPTIFEVTYRGTH 198          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPT 791
            D + WRKYGQK +KG+  PR YY+C + +GC  +KQVER+ +D    + TY   HNH  PT
Sbjct:  329 DGFRWRKYGQKVVKGNTNPRSYYKC-TFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPT 388          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.424e-11
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNH 779
            D + WRKYGQK +K +P+PR YY+C + +GC  +KQV+R   D G+ + TY   H H
Sbjct:   66 DGYRWRKYGQKAVKNNPFPRSYYKC-TEEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            D + WRKYGQK +K + +PR YYRC+  K C  +K+VER   DP M I TY   H H    H +  + ST
Sbjct:  224 DGYRWRKYGQKVVKNTQHPRSYYRCTQDK-CRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDDDSLST 292          
The following BLAST results are available for this feature:
BLAST of FC878125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
WRK41_ARATH3.766e-1150.00Probable WRKY transcription factor 41 OS=Arabidops... [more]
WRK25_ARATH4.919e-1149.18Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK45_ARATH6.424e-1147.37Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRK13_ARATH8.390e-1145.71Probable WRKY transcription factor 13 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878125 ID=FC878125; Name=FC878125; organism=Citrus clementina; type=EST; length=819bp
TCATAAGTCAGCGCCTTCTTTTGTCTCTGTCTCTTTCCCTTTTCCTTTCT
CTTAACAGAAGTACCAGACGAGAGGGTACAGATTCACAGCGCTTTTGTCT
CTTGAAGGCTAGCGAAGAGCCATGGAAGTTGACTGGGATCTGCATGCGGT
GGTCAGAGGCTGCAACAGCTCCGTTAACGCCACCGTTACAACAACTACAG
CCACCACCACAAGTACCACCACAAGTTTCAAGGATGATTTAGATACTACT
AATTCAATCTTGGTTTTCGGTTTCTCCATTTAGCCGTGAACAAACCAGTG
GTCATCTTTTCACCTTGGCCGATCCTTTCGAAGCAAGAAATGCTATTGAA
GAGCTGCATGAACTTTATAAGCCATTCTTTCCCAAATCTCCTCAGCCTAT
TTCTCCCAAAAGTAGTCAACCCATCTCGTCTTCTATTTCTTCTATCAATT
CATCATCATCAAAGGAACAGACTCAGTTCAAACAGCAGCAGCCTAATAAT
AAGCAGTCTCATGCTAGTTCTGTCACTAGTTCCACAACTCCTCGAACCAA
AAGAAGAAAGAATCAGCTCAAGAGAGTTTGTCATGTCCCAGCTGAAGGTC
TCTCTTCCGACGTTTGGGCTTGGAGAAAATATGGCCAAAAACCCATTAAA
GGCTCCCCCTATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTG
CTTGGCCCGGAAACAAGTGGAGCGAAACAGATCCGACCCCGGTATGTTCA
TAGTAACATATACGGCAGAGCACAACCACCCAGCTCCCACTCACAGAAAC
TCACTCGCCGGAAGCACCC
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