FC878127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17 Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1 Query: 184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQ-----------AFLGTTLSSTLVY 549 E+W+ +MP+ TR + TA VVT V II+P+ L+ + + V + WRL+T F+YF + L+ LFH+FF+ RY ++LEE++ A F +++ + AT L I I FL +L+ +VY Sbjct: 6 EEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVY 140
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15 Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 1 Query: 199 EMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549 EMP TR++T A V+ V +TPF L++++ + K Q+WRL+T+F +FG + LF++ F RY MLEE + A F ++ + A ++ FLG + LVY Sbjct: 10 EMPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVY 128
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14 Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1 Query: 187 QWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTL--LTIAPISSQAFLGTTLSSTLVY 549 +++ +P ++ + T T VLVQ I+ P L+ Y VF K + WRLLT+F + P S+ + I RY MLE+ A A F W+M + A +L L+I P+ + FLG + S L+Y Sbjct: 6 EYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFLGIPMVSMLLY 130
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14 Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1 Query: 187 QWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTL--LTIAPISSQAFLGTTLSSTLVY 549 +++ +P ++ + T T VLV+ HI+ P L+ Y VF K + WR+ T+F + GP S+N + I RY MLE+ A A F W+M + A +L L++ P + LG + S LVY Sbjct: 6 EYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVLGLPMVSMLVY 130
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14 Identity = 36/131 (27.48%), Postives = 73/131 (55.73%), Query Frame = 1 Query: 184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAP-------ISSQAFLGTTLSSTLVY 549 E W+ +P+ T+ + T VVT V V ++ P +L+ ++ VF K ++WRL T F ++ + +N FH++F+ R++R+LEES+ A + ++ + + LL + ++ FL +++ ++Y Sbjct: 6 EDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIVTKVLFLAPSIAFMVIY 136
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11 Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 1 Query: 187 QWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIA--PISSQAFLGTTLSSTLVY 549 +++ +P ++ + T VL Q I+ P L Y VF K Q WRL T+F + G S+N + I RY LE+ A A F W+M + A +LL ++ P FLG + S L+Y Sbjct: 6 EYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSMLLY 130 The following BLAST results are available for this feature:
BLAST of FC878127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878127 ID=FC878127; Name=FC878127; organism=Citrus clementina; type=EST; length=549bpback to top |