FC878127

Overview
NameFC878127
Unique NameFC878127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4719 contig Ccv1_Contig4719:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.670e-17
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQ-----------AFLGTTLSSTLVY 549
            E+W+ +MP+ TR + TA VVT V     II+P+ L+ + + V    + WRL+T F+YF  + L+ LFH+FF+ RY ++LEE++     A F +++ + AT L  I  I               FL  +L+  +VY
Sbjct:    6 EEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVY 140          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  199 EMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAPISSQAFLGTTLSSTLVY 549
            EMP  TR++T A V+    V    +TPF L++++  +  K Q+WRL+T+F +FG    + LF++ F  RY  MLEE +     A F ++  + A  ++         FLG   +  LVY
Sbjct:   10 EMPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVY 128          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 44/125 (35.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  187 QWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTL--LTIAPISSQAFLGTTLSSTLVY 549
            +++  +P  ++ + T    T VLVQ  I+ P  L+  Y  VF K + WRLLT+F +  P S+     +  I RY  MLE+ A     A F W+M + A +L  L+I P+ +  FLG  + S L+Y
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSIIPLFNSFFLGIPMVSMLLY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.728e-14
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  187 QWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTL--LTIAPISSQAFLGTTLSSTLVY 549
            +++  +P  ++ + T    T VLV+ HI+ P  L+  Y  VF K + WR+ T+F + GP S+N    +  I RY  MLE+ A     A F W+M + A +L  L++ P  +   LG  + S LVY
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAISLLVLSVIPQLNTYVLGLPMVSMLVY 130          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.028e-14
Identity = 36/131 (27.48%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  184 EQWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIAP-------ISSQAFLGTTLSSTLVY 549
            E W+  +P+ T+ + T  VVT V V   ++ P +L+ ++  VF K ++WRL T F ++  + +N  FH++F+ R++R+LEES+     A + ++  + +  LL +         ++   FL  +++  ++Y
Sbjct:    6 EDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLLLIMDAFLFYTKIVTKVLFLAPSIAFMVIY 136          
BLAST of FC878127 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 1
Query:  187 QWFFEMPVCTRWWTTATVVTGVLVQCHIITPFQLFYSYRAVFHKSQYWRLLTTFIYFGPLSLNLLFHIFFIQRYARMLEESA--ASVAHFAWLMFYAATTLLTIA--PISSQAFLGTTLSSTLVY 549
            +++  +P  ++ + T      VL Q  I+ P  L   Y  VF K Q WRL T+F + G  S+N    +  I RY   LE+ A     A F W+M + A +LL ++  P     FLG  + S L+Y
Sbjct:    6 EYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSMLLY 130          
The following BLAST results are available for this feature:
BLAST of FC878127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DER22_MAIZE1.670e-1734.81Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DERL2_CAEEL2.041e-1533.61Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DER11_MAIZE1.323e-1435.20Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE1.728e-1434.40Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL2_DICDI5.028e-1427.48Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL1_ORYSJ2.335e-1132.80Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA3CA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878127 ID=FC878127; Name=FC878127; organism=Citrus clementina; type=EST; length=549bp
AGCGAATCCAAGCAAACAACCGACTCGCTACCACATCACCTCTCTCGATA
CTGTGCACACTTGATGCAGCGACCATAATACAACAACACCTGCACCTTAC
TTCCGACGTTCCACGGCTAAGCGACAATCAACATGGCTGCAATGCTGGGC
GGCGGCGATGGACCACTGGGACAACTACCTCTAGAACAGTGGTTCTTCGA
GATGCCCGTGTGCACAAGATGGTGGACAACAGCGACGGTGGTCACGGGAG
TTCTGGTACAATGTCACATCATCACACCCTTCCAGCTGTTCTACAGCTAT
CGCGCGGTGTTCCACAAAAGCCAGTACTGGCGGCTGCTCACAACCTTCAT
ATACTTTGGACCACTGTCACTCAACCTGCTCTTCCACATATTCTTCATCC
AGCGCTATGCGCGAATGCTCGAGGAGTCTGCTGCAAGCGTGGCACACTTT
GCATGGCTGATGTTCTACGCCGCAACTACCCTCCTTACTATCGCGCCGAT
CTCAAGTCAGGCTTTCTTGGGCACCACCCTCAGCTCAACGCTCGTCTAC
back to top